Bioconductor Pathway

Showing : Pathway • reset

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627

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pathway ORA limma CAMERA DGE

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by manuelsokolov • 0

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915

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pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

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971

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pathway KEGGREST GSEA

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by MOHAMMAD • 0

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1.1k

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pathway KEGG annotation annotationhub

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by Bogdan ▴ 670

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4.6k

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R ClusterProfiler Enrichment Pathway

updated 10 months ago by Guido Hooiveld ★ 3.9k • written 4.0 years ago by t.b.kuipers • 0

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1.7k

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pathview kegg r pathway

4.5 years ago • updated 4.4 years ago AZ ▴ 30

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1.0k

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limma pathway

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by Dario Strbenac ★ 1.5k

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775

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kegg pathway pathview

5.1 years ago Ahdee ▴ 50

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730

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IHW deseq2 Pathway

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by guidobarzaghi ▴ 20

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1.5k

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deseq2 pathway ihw

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by guidobarzaghi ▴ 20

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900

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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4.5k

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pathview KEGGgraph gage pathway pathway analysis

6.8 years ago Luo Weijun ★ 1.6k

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1.4k

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pathway paxtools

9.5 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

Recent ...

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length