Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RMA
•
reset
0
votes
5
replies
1.2k
views
oligo rma() background normalization crash in basicRMA()
basicRMA
crash
rma
oligo
15 months ago
Steffen Moeller
▴ 90
1
vote
1
reply
819
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip
RMA
updated 19 months ago by
Mike Smith
★ 6.5k • written 19 months ago by
Sara
▴ 10
4
votes
6
replies
1.3k
views
RMA on different disease labels
rma
background
microarray
normalization
updated 2.6 years ago by
James W. MacDonald
66k • written 2.6 years ago by
Joshua
• 0
1
vote
2
replies
1.1k
views
oligo package blas error
rma
openblas
blas
oligo
2.7 years ago
ch_el
▴ 10
0
votes
2
replies
1.1k
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy
rma
frma
oligo
updated 4.6 years ago by
James W. MacDonald
66k • written 4.6 years ago by
chziy429
• 0
1
vote
1
reply
544
views
RMA for multiple samples
biostatistic
RMA
updated 4.8 years ago by
James W. MacDonald
66k • written 4.8 years ago by
ijvechetti
▴ 10
0
votes
5
replies
2.1k
views
Install a custom CDF file
makecdf
RMA
annotation
biobase
GEOquery
updated 4.9 years ago by
James W. MacDonald
66k • written 4.9 years ago by
Seymoo
• 0
0
votes
2
replies
889
views
R: rma() function error
rma
normalization
microarray
updated 4.9 years ago by
James W. MacDonald
66k • written 4.9 years ago by
get3232
• 0
1
vote
2
replies
1.5k
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo
HTA2.0
affycoretools
RMA
fitProbeLevelModel
updated 5.0 years ago by
James W. MacDonald
66k • written 5.0 years ago by
Guido Hooiveld
★ 4.0k
2
votes
5
replies
1.2k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy
cdf
rma
updated 5.6 years ago by
Guido Hooiveld
★ 4.0k • written 5.6 years ago by
Walter Jessen
• 0
1
vote
0
replies
1.5k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.5 years ago
s.munster
▴ 40
0
votes
5
replies
1.8k
views
Probe summerization of Human HT-12 V4 BeadChip arrays
beadarray
bead chip
illuminahumanv4.db
normalization
RMA
updated 6.6 years ago by
James W. MacDonald
66k • written 6.6 years ago by
Seymoo
• 0
0
votes
1
reply
1.3k
views
oligo rma() function giving unused argument error
oligo
rma
updated 7.2 years ago by
James W. MacDonald
66k • written 7.2 years ago by
Jiayi Sun
▴ 40
0
votes
3
replies
3.1k
views
how to use log2 transformation and limma
RMA
normalization
7.2 years ago
nia
▴ 30
2
votes
1
reply
1.6k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 7.3 years ago by
James W. MacDonald
66k • written 7.3 years ago by
lcordeiro
• 0
2
votes
1
reply
1.1k
views
perform probe level RMA without summarization
u133a
normalization
rma
affy
updated 7.4 years ago by
James W. MacDonald
66k • written 7.4 years ago by
jxd_84
▴ 10
0
votes
1
reply
909
views
Microarray normalization---RMA and / or centering+scaling?
microarray
normalization
rma
updated 7.8 years ago by
James W. MacDonald
66k • written 7.8 years ago by
michaericalribo
• 0
3
votes
3
replies
2.7k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.3 years ago by
James W. MacDonald
66k • written 8.3 years ago by
jennifer.drake
• 0
2
votes
3
replies
2.5k
views
RAW data in matrix: RMA normalization?
RMA
affy
raw expression
updated 8.4 years ago by
James W. MacDonald
66k • written 8.4 years ago by
alexvpickering
▴ 110
0
votes
1
reply
1.8k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray
affymetrix
oligo
RMA
normalization
updated 8.5 years ago by
James W. MacDonald
66k • written 8.5 years ago by
Nathaniel
▴ 20
0
votes
1
reply
1.7k
views
Error when running "eset <- rma(affyRaw)"
rma
updated 8.5 years ago by
Axel Klenk
★ 1.0k • written 8.5 years ago by
mochammad.ichsan87
• 0
0
votes
1
reply
1.0k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy
xps
rma
oligo
updated 8.6 years ago by
Guido Hooiveld
★ 4.0k • written 8.6 years ago by
steppydeklin
▴ 10
0
votes
2
replies
2.0k
views
Error with Normalization using (rma) method !!!
normalization
rma
updated 8.6 years ago by
James W. MacDonald
66k • written 8.6 years ago by
libya.tahani
• 0
2
votes
5
replies
5.6k
views
Oligo package RMA() function giving error
oligo
rma
updated 8.8 years ago by
Benilton Carvalho
★ 4.3k • written 8.8 years ago by
Jo
▴ 30
1
vote
7
replies
2.7k
views
reading a *.txt file of expression values into an AffyBatch
affy
normalization
rma
updated 8.9 years ago by
James W. MacDonald
66k • written 8.9 years ago by
m
• 0
1
vote
4
replies
1.5k
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error
probe
affy
RMA
8.9 years ago
Angel
▴ 40
0
votes
1
reply
1.7k
views
Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a
rma
normalization
affy
updated 9.2 years ago by
svlachavas
▴ 830 • written 9.2 years ago by
parisa_1986
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards
• All
Popular Question
to
swbarnes2
★ 1.4k
Popular Question
to
Stephanie M. Gogarten
▴ 870
Popular Question
to
Jonathan
▴ 10
Popular Question
to
Frederico Moraes Ferreira
▴ 100
Popular Question
to
richardallenfriedmanbrooklyn
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
30 minutes ago
Canada,
37 minutes ago
The city by the bay,
1 hour ago
United States,
2 hours ago
United States,
3 hours ago
Traffic: 364 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6