Bioconductor RNA-SEQ

Showing : RNA-SEQ • reset

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289

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rna-seq edgeR

updated 5 days ago by Gordon Smyth 50k • written 18 days ago by Netanel • 0

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7.8k

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deseq2 edgeR rna-seq

updated 7 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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902

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.0k • written 6.0 years ago by saad_k6 • 0

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301

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RNA-Seq WGCNA Worms

5 months ago davca • 0

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682

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RNA-seq DESeq2

6 months ago ar14g12 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.5k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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640

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DEXSeq RNA-seq DESeq2

updated 7 months ago by Alejandro Reyes ★ 1.9k • written 7 months ago by Alice • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 7 months ago by manuel.fernandez • 0 • written 2.0 years ago by cicely.day • 0

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852

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BatchEffect lfcshrink RNA-seq DESeq2

8 months ago Eva ▴ 10

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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670

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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839

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

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701

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

16 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0