Bioconductor RNA-Seq

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1.7k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by gingergeiger22 • 0

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7.9k

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deseq2 edgeR rna-seq

updated 4 weeks ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

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371

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rna-seq edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Netanel • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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188

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DESeq2 PCAplot RNA-Seq DesignModel

updated 22 hours ago by Michael Love 42k • written 3 days ago by shaunpeterson • 0

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264

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RNA-seq DESeq2

updated 16 days ago by ATpoint ★ 4.1k • written 17 days ago by Reza • 0

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737

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RNA-seq DESeq2

7 months ago ar14g12 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by mohammedtoufiq91 ▴ 10

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712

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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698

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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897

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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327

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RNA-Seq WGCNA Worms

6 months ago • updated 5 months ago davca • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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289

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rna-seq duplicateCorrelation limma voom

12 days ago • updated 11 days ago Dylan.Sheerin • 0

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921

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correlation pearsoncorrelation rna-seq differential gene expression

updated 5 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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703

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noiseq RNA-seq quality control

updated 15 minutes ago by baptiste.bidon • 0 • written 4.7 years ago by ag1805x ▴ 80

17 results • Page 1 of 1

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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

Hello everyone, I am new on this site but not a noob in R (I guess). I am facing the same problem. For me, it depends on the NOIseq plot fu…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10