Bioconductor RNA-Seq

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7.9k

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deseq2 edgeR rna-seq

updated 4 weeks ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

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3.6k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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1.7k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by gingergeiger22 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by mohammedtoufiq91 ▴ 10

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921

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correlation pearsoncorrelation rna-seq differential gene expression

updated 5 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

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898

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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737

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RNA-seq DESeq2

7 months ago ar14g12 • 0

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727

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noiseq RNA-seq quality control

updated 1 day ago by baptiste.bidon • 0 • written 4.7 years ago by ag1805x ▴ 80

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714

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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699

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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371

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rna-seq edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Netanel • 0

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330

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RNA-Seq WGCNA Worms

6 months ago davca • 0

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292

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rna-seq duplicateCorrelation limma voom

13 days ago • updated 12 days ago Dylan.Sheerin • 0

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265

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RNA-seq DESeq2

updated 17 days ago by ATpoint ★ 4.1k • written 19 days ago by Reza • 0

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202

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DESeq2 PCAplot RNA-Seq DesignModel

updated 2 days ago by Michael Love 42k • written 5 days ago by shaunpeterson • 0

17 results • Page 1 of 1

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Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k

Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…

Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0

Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …

Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0

This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249

Comment: Slightly different count plots from R and spreadsheet by Michael Love 42k

Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…

Answer: WGNCA kME vs. kIM by Vitor • 0

You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). !…

Votes

Including squared covariates to account for non-linear dependencies in differential gene expression analysis

DESeq2 DE gene expression of scRNA-seq pseudobulk

Answer: Multiple factor DSEq2 result generates weird volcano plot

DESeq2 for single cell pseudobulk processing

Simultaneously adding two different covariates in the model gives error in DESeq2.

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Popular Question to Jenny Drnevich ★ 2.0k

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