Showing : SVAseq • reset
0
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1
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660
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how to identify the unwanted variables independent of phenotypes
RUVSeq svaseq
22 months ago Tongjun • 0
0
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0
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1.1k
views
SVA method for estimating surrogate variables of RNA Seq
RNASeq sva svaseq
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
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0
replies
793
views
SVAseq for differential transcript usage and differential splicing analysis
limma sva Leafcutter SVAseq
2.6 years ago georgia.katsoula ▴ 40
0
votes
1
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777
views
SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 30
1
vote
1
reply
930
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svaseq - over adjustment
svaseq sva
5.1 years ago flippy23 • 0
1
vote
1
reply
884
views
sva correction for MEDIPS
MEDIPS svaseq sva
updated 5.3 years ago by ▴ 570 • written 5.3 years ago by • 0
2
votes
3
replies
1.6k
views
Batch-effect: batch in design and corrected batch with sva- DESeq2
deseq2 svaseq
5.3 years ago bioinfo • 0
3
votes
4
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1.5k
views
Calling svaseq() multiple times
edger sva svaseq limma
updated 6.0 years ago by ★ 7.9k • written 6.0 years ago by ▴ 20
1
vote
2
replies
3.2k
views
Applying SVA to RNA-Seq dataset
DESeq2 sva svaseq batch effect correction
6.3 years ago L_K • 0
0
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0
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1.1k
views
correlated known batch effect correction using svaseq
svaseq batcheffectcorrection
6.5 years ago burcu.atasu • 0
1
vote
1
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1.5k
views
Outputting batch-effect free normalized counts
ruvseq svaseq edaseq
updated 6.5 years ago by ▴ 950 • written 6.5 years ago by ▴ 10
0
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0
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1.2k
views
Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
6.8 years ago vedran.franke • 0
1
vote
6
replies
1.7k
views
RNASeq fold change analysis after subtraction of contaminating MEF signal
deseq2 svaseq
updated 6.8 years ago by 42k • written 6.8 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Taking surrogate variable into account before running PCA
sva svaseq
updated 6.9 years ago by ★ 4.0k • written 6.9 years ago by • 0
3
votes
2
replies
2.5k
views
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 670
2
votes
7
replies
1.8k
views
Is possible to apply 'svaseq' with 'DEXSeq' design in order to remove unknown batch effects ?
svaseq dexseq
updated 7.3 years ago by ★ 1.9k • written 7.3 years ago by • 0
3
votes
6
replies
2.3k
views
is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.6 years ago by ▴ 50 • written 7.6 years ago by ▴ 10
5
votes
7
replies
5.2k
views
Correcting for known and surrogate variables in DESeq2
deseq2 svaseq
7.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
2
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1
reply
1.7k
views
Regarding batch effect in Deseq2 package
deseq2 sva svaseq
updated 7.7 years ago by 42k • written 7.7 years ago by ▴ 20
0
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3
replies
2.5k
views
can we use sva function to estimate artifacts for rna seq data?
sva svaseq batcheffectcorrection
updated 7.8 years ago by ▴ 650 • written 7.8 years ago by ▴ 20
1
vote
5
replies
3.7k
views
PCA of svaseq "cleaned" counts and DESeq2 SV subtracted counts are different?
deseq2 sva svaseq pca
7.9 years ago Peter Alto ▴ 10
21 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by jane • 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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