Bioconductor SVAseq

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510

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DESeq2 Normalisation Bulkrnaseq Svaseq

7 months ago BioinfGuru ▴ 70

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861

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RUVSeq svaseq

2.5 years ago Tongjun • 0

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1.3k

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RNASeq sva svaseq

updated 3.0 years ago by James W. MacDonald 67k • written 3.0 years ago by Bex • 0

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996

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limma sva Leafcutter SVAseq

3.3 years ago georgia.katsoula ▴ 40

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974

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sva svaseq surrogate variable analysis

updated 4.7 years ago by James W. MacDonald 67k • written 4.7 years ago by Mozart ▴ 30

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1.1k

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svaseq sva

5.8 years ago flippy23 • 0

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1.0k

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MEDIPS svaseq sva

updated 6.0 years ago by Lukas Chavez ▴ 570 • written 6.0 years ago by tofukaj • 0

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1.9k

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deseq2 svaseq

6.0 years ago bioinfo • 0

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1.8k

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edger sva svaseq limma

updated 6.6 years ago by Ryan C. Thompson ★ 7.9k • written 6.6 years ago by cats_dogs ▴ 20

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3.7k

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DESeq2 sva svaseq batch effect correction

7.0 years ago L_K • 0

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1.3k

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svaseq batcheffectcorrection

7.2 years ago burcu.atasu • 0

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1.7k

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ruvseq svaseq edaseq

updated 7.2 years ago by davide risso ▴ 980 • written 7.2 years ago by llo ▴ 10

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1.4k

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sva svaseq batch effect batch effects batch effect correction

7.4 years ago vedran.franke • 0

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1.9k

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deseq2 svaseq

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by gpalidwor ▴ 10

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2.0k

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sva svaseq

updated 7.6 years ago by Guido Hooiveld ★ 4.1k • written 7.6 years ago by wamiqsaifi • 0

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2.7k

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limma sva svaseq

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by Bogdan ▴ 670

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2.0k

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svaseq dexseq

updated 7.9 years ago by Alejandro Reyes ★ 1.9k • written 7.9 years ago by tofukaj • 0

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2.8k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.2 years ago by Jakub ▴ 50 • written 8.2 years ago by amoltej ▴ 10

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5.9k

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deseq2 svaseq

8.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.0k

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deseq2 sva svaseq

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by szenitha ▴ 20

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2.8k

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sva svaseq batcheffectcorrection

updated 8.4 years ago by Jeff Leek ▴ 650 • written 8.4 years ago by szenitha ▴ 20

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4.0k

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deseq2 sva svaseq pca

8.6 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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