Bioconductor SVAseq

Showing : SVAseq • reset

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1.0k

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DESeq2 Normalisation Bulkrnaseq Svaseq

20 months ago BioinfGuru ▴ 70

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1.1k

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RUVSeq svaseq

3.6 years ago Tongjun • 0

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1.7k

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RNASeq sva svaseq

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by Bex • 0

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1.3k

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limma sva Leafcutter SVAseq

4.4 years ago georgia.katsoula ▴ 40

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1.2k

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sva svaseq surrogate variable analysis

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by Mozart ▴ 30

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1.4k

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svaseq sva

6.9 years ago flippy23 • 0

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1.3k

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MEDIPS svaseq sva

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by tofukaj • 0

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2.4k

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deseq2 svaseq

7.0 years ago bioinfo • 0

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2.2k

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edger sva svaseq limma

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by cats_dogs ▴ 20

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4.4k

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DESeq2 sva svaseq batch effect correction

8.0 years ago L_K • 0

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1.5k

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svaseq batcheffectcorrection

8.2 years ago burcu.atasu • 0

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2.1k

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ruvseq svaseq edaseq

updated 8.3 years ago by davide risso ▴ 980 • written 8.3 years ago by llo ▴ 10

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1.7k

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sva svaseq batch effect batch effects batch effect correction

8.5 years ago vedran.franke • 0

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2.3k

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deseq2 svaseq

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by gpalidwor ▴ 10

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2.5k

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sva svaseq

updated 8.7 years ago by Guido Hooiveld ★ 4.1k • written 8.7 years ago by wamiqsaifi • 0

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3.0k

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limma sva svaseq

updated 9.0 years ago by Aaron Lun ★ 29k • written 9.0 years ago by Bogdan ▴ 670

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2.4k

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svaseq dexseq

updated 9.0 years ago by Alejandro Reyes ★ 1.9k • written 9.0 years ago by tofukaj • 0

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3.6k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 9.3 years ago by Jakub ▴ 50 • written 9.3 years ago by amoltej ▴ 10

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6.7k

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deseq2 svaseq

9.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.5k

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deseq2 sva svaseq

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by szenitha ▴ 20

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3.2k

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sva svaseq batcheffectcorrection

updated 9.5 years ago by Jeff Leek ▴ 650 • written 9.5 years ago by szenitha ▴ 20

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4.5k

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deseq2 sva svaseq pca

9.7 years ago Peter Alto ▴ 20

22 results • Page 1 of 1

Recent ...

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Awards • All

Popular Question to Guido Hooiveld ★ 4.1k