Bioconductor SVAseq

Showing : SVAseq • reset

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6.5k

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deseq2 svaseq

9.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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4.4k

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deseq2 sva svaseq pca

9.5 years ago Peter Alto ▴ 20

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4.2k

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DESeq2 sva svaseq batch effect correction

7.9 years ago L_K • 0

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3.5k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 9.2 years ago by Jakub ▴ 50 • written 9.2 years ago by amoltej ▴ 10

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3.2k

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sva svaseq batcheffectcorrection

updated 9.4 years ago by Jeff Leek ▴ 650 • written 9.4 years ago by szenitha ▴ 20

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3.0k

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limma sva svaseq

updated 8.8 years ago by Aaron Lun ★ 29k • written 8.8 years ago by Bogdan ▴ 670

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2.4k

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deseq2 sva svaseq

updated 9.3 years ago by Michael Love 43k • written 9.3 years ago by szenitha ▴ 20

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2.4k

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sva svaseq

updated 8.5 years ago by Guido Hooiveld ★ 4.1k • written 8.5 years ago by wamiqsaifi • 0

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2.4k

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deseq2 svaseq

6.9 years ago bioinfo • 0

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2.3k

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svaseq dexseq

updated 8.9 years ago by Alejandro Reyes ★ 1.9k • written 8.9 years ago by tofukaj • 0

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2.3k

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deseq2 svaseq

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by gpalidwor ▴ 10

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2.2k

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edger sva svaseq limma

updated 7.6 years ago by Ryan C. Thompson ★ 7.9k • written 7.6 years ago by cats_dogs ▴ 20

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2.0k

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ruvseq svaseq edaseq

updated 8.1 years ago by davide risso ▴ 980 • written 8.1 years ago by llo ▴ 10

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1.6k

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sva svaseq batch effect batch effects batch effect correction

8.3 years ago vedran.franke • 0

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1.6k

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RNASeq sva svaseq

updated 3.9 years ago by James W. MacDonald 68k • written 3.9 years ago by Bex • 0

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1.5k

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svaseq batcheffectcorrection

8.1 years ago burcu.atasu • 0

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1.3k

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svaseq sva

6.7 years ago flippy23 • 0

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1.2k

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limma sva Leafcutter SVAseq

4.2 years ago georgia.katsoula ▴ 40

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1.2k

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MEDIPS svaseq sva

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by tofukaj • 0

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1.2k

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sva svaseq surrogate variable analysis

updated 5.7 years ago by James W. MacDonald 68k • written 5.7 years ago by Mozart ▴ 30

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1.1k

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RUVSeq svaseq

3.4 years ago Tongjun • 0

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947

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DESeq2 Normalisation Bulkrnaseq Svaseq

18 months ago BioinfGuru ▴ 70

22 results • Page 1 of 1

Recent ...

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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