Showing : SingleCellData • reset
0
votes
0
replies
192
views
News: Course: Single-cell analysis with R/Bioconductor
SingleCellExperiment SingleCell SingleCellWorkflow SingleCellData
5 months ago Ludwig Geistlinger ▴ 80
1
vote
3
replies
1.3k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
8 months ago Konstantinos Yeles ▴ 90
0
votes
1
reply
1.5k
views
How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
SingleCellData DESeq2 pseudobulk sing
updated 11 months ago by 68k • written 11 months ago by • 0
0
votes
0
replies
447
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
11 months ago Muhammad • 0
0
votes
2
replies
1.5k
views
Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN SingleCellData BatchEffect batchelor
15 months ago José • 0
0
votes
1
reply
766
views
Is CEMiTool for gene coexpression analysis suitable for single cell RNA Seq data?
SingleCellData CEMiTool
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
830
views
Dimensionality reduction visualization
imcRtools SingleCellData imcdatasets SpatialWorkflow
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
10
replies
3.9k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
written 2.2 years ago by • 0
0
votes
2
replies
1.1k
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by • 0
0
votes
3
replies
1.5k
views
insufficient unique points for computing knee/inflection points
DropletUtils SingleCellData
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by • 0
0
votes
2
replies
2.1k
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
2.6 years ago Matvii Mykhailichenko • 0
1
vote
0
replies
1.2k
views
Job: Research Assistant - Computational Biology/Immunology, Memorial Sloan Kettering, New York
SingleCellData ComputationalBiology
2.8 years ago Chrysothemis ▴ 10
0
votes
0
replies
1.4k
views
Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
3.2 years ago Diego's • 0
0
votes
0
replies
1.0k
views
Gene Id duplicated
SingleCell SingleCellData
updated 3.4 years ago by ★ 5.0k • written 3.4 years ago by • 0
2
votes
4
replies
2.2k
views
How to detect LacZ tagged cells from single cell
SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
updated 6 months ago by • 0 • written 3.4 years ago by ▴ 20
2
votes
4
replies
1.8k
views
Summary of library size factor is all equal to one
SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment
3.4 years ago Romina • 0
0
votes
1
reply
1.5k
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData splatter
updated 3.8 years ago by ▴ 50 • written 3.8 years ago by • 0
0
votes
1
reply
1.3k
views
Running PLAGE gets killed
GSVA SingleCellData
updated 3.9 years ago by ★ 3.4k • written 3.9 years ago by • 0
2
votes
1
reply
2.8k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase SingleCellData seurat SingleCell
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
1
vote
3
replies
2.7k
views
10X FeatureBarcode producing too many "cells"
SingleCellExperiment DropletUtils SingleCellData
updated 5.1 years ago by ★ 29k • written 5.1 years ago by ▴ 10
20 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards • All
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to shepherl 4.3k
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Locations • All
Germany, 14 minutes ago
United States, 20 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Pakistan, 1 hour ago
Traffic: 1243 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6