Showing : SingleCellData • reset
0
votes
0
replies
115
views
News: Course: Single-cell analysis with R/Bioconductor
SingleCellExperiment SingleCell SingleCellWorkflow SingleCellData
7 weeks ago Ludwig Geistlinger ▴ 70
1
vote
3
replies
1.1k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
5 months ago • updated 4 months ago Konstantinos Yeles ▴ 90
0
votes
1
reply
792
views
How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differential Gene Expression analysis in scRNA-seq?
SingleCellData DESeq2 pseudobulk sing
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
0
replies
320
views
Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
8 months ago Muhammad • 0
0
votes
2
replies
1.1k
views
Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN SingleCellData BatchEffect batchelor
12 months ago José • 0
0
votes
1
reply
673
views
Is CEMiTool for gene coexpression analysis suitable for single cell RNA Seq data?
SingleCellData CEMiTool
updated 14 months ago by 68k • written 14 months ago by • 0
0
votes
1
reply
674
views
Dimensionality reduction visualization
imcRtools SingleCellData imcdatasets SpatialWorkflow
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
10
replies
3.7k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
written 22 months ago by • 0
0
votes
2
replies
922
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 23 months ago by ★ 5.0k • written 23 months ago by • 0
0
votes
3
replies
1.4k
views
insufficient unique points for computing knee/inflection points
DropletUtils SingleCellData
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by • 0
0
votes
2
replies
2.0k
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
2.3 years ago Matvii Mykhailichenko • 0
1
vote
0
replies
1.2k
views
Job: Research Assistant - Computational Biology/Immunology, Memorial Sloan Kettering, New York
SingleCellData ComputationalBiology
2.5 years ago Chrysothemis ▴ 10
0
votes
0
replies
1.2k
views
Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
2.9 years ago Diego's • 0
0
votes
0
replies
908
views
Gene Id duplicated
SingleCell SingleCellData
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
2
votes
4
replies
2.0k
views
How to detect LacZ tagged cells from single cell
SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
updated 3 months ago by • 0 • written 3.1 years ago by ▴ 20
2
votes
4
replies
1.6k
views
Summary of library size factor is all equal to one
SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment
3.1 years ago Romina • 0
0
votes
1
reply
1.4k
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData splatter
updated 3.5 years ago by ▴ 50 • written 3.5 years ago by • 0
0
votes
1
reply
1.2k
views
Running PLAGE gets killed
GSVA SingleCellData
updated 3.6 years ago by ★ 3.4k • written 3.6 years ago by • 0
2
votes
1
reply
2.5k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase SingleCellData seurat SingleCell
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
1
vote
3
replies
2.5k
views
10X FeatureBarcode producing too many "cells"
SingleCellExperiment DropletUtils SingleCellData
updated 4.8 years ago by ★ 29k • written 4.8 years ago by ▴ 10
20 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 for candidate gene analysis by horrible.junglefowl.xkxi • 0
The free online calculator has become an indispensable tool in our digital world. Its versatility, accessibility, and ease of use make it a…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Awards • All
Popular Question to Hervé Pagès 16k
Popular Question to jf1 • 0
Popular Question to Gordon Smyth 53k
Popular Question to dan.gatti • 0
Popular Question to shepherl 4.2k
Locations • All
Finland, just now
United States, 6 minutes ago
United States, 10 minutes ago
United States, 21 minutes ago
Spain, 34 minutes ago
Traffic: 941 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6