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XCMS
•
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0
votes
1
reply
1.7k
views
error when reading .mzML with xcms::xcmsSet
software error
R
mzR
xcms
9.1 years ago
buescher
• 0
1
vote
7
replies
3.1k
views
Can XCMS output continuum/profile data to netCDF format?
xcms
convert
protein
updated 9.1 years ago by
Johannes Rainer
★ 2.1k • written 9.1 years ago by
ray.bacala
• 0
0
votes
1
reply
1.6k
views
get LCMS masses with more significant figures
source code
xcms
m/z
groupval
xcmsSet
updated 9.2 years ago by
Johannes Rainer
★ 2.1k • written 9.2 years ago by
juniormbarga
• 0
0
votes
1
reply
1.8k
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
micheleserra
• 0
0
votes
1
reply
2.1k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 9.7 years ago by
ron.wehrens
▴ 20 • written 9.7 years ago by
lucie.conchou
• 0
0
votes
6
replies
3.5k
views
Help Error could not find function xcmsSet
xcms
metabolomics
mzr rcpp
ramp
9.7 years ago
dfrtyu
• 0
0
votes
4
replies
2.9k
views
Segfault error when loading xcms and mzR packages
software error
mzr
xcms
9.9 years ago
pmartin
• 0
0
votes
0
replies
1.5k
views
fillPeaks not calculating "intb" values.
xcms
metabolomics
9.9 years ago
Johannes Rainer
★ 2.1k
1
vote
3
replies
3.1k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
10.0 years ago
Titan
• 0
0
votes
3
replies
2.8k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
10.0 years ago
Titan
• 0
0
votes
4
replies
3.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms
metabolomics
lipidomics
statistics
10.0 years ago
Titan
• 0
0
votes
4
replies
3.5k
views
mzR could not be loaded on XCMS
xcms
msdata
mzR
Rcpp
metabolomics
10.1 years ago
Titan
• 0
0
votes
3
replies
4.5k
views
how to import a CDF file in R ?
xcms
metaMS
MSeasy
r
updated 10.3 years ago by
peer.karmaus
• 0 • written 10.3 years ago by
Nemo
▴ 80
0
votes
2
replies
1.8k
views
get LCMS masses with more significant figures with xcmsRaw()
R
xcms
xcmsRaw
LC
updated 10.5 years ago by
Johannes Rainer
★ 2.1k • written 10.5 years ago by
phoenix
• 0
0
votes
3
replies
3.0k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms
metabolomics
10.7 years ago
Johannes Rainer
★ 2.1k
2
votes
9
replies
3.6k
views
Unexpected total ion count (TIC) with xcms package
xcms
metabolomics
updated 10.8 years ago by
Thomas Lin Pedersen
▴ 70 • written 10.8 years ago by
Johannes Rainer
★ 2.1k
1
vote
3
replies
1.7k
views
Unable to set colors in plotrt function in xcms package
xcms
bug
10.8 years ago
Johannes Rainer
★ 2.1k
1
vote
4
replies
2.9k
views
How to get from xcmsRaw to a xcmsSet
xcms
metabolomics
updated 10.8 years ago by
Thomas Lin Pedersen
▴ 70 • written 10.8 years ago by
Johannes Rainer
★ 2.1k
0
votes
5
replies
2.4k
views
XCMS for LC-MS
xcms
xcms
updated 12.1 years ago by
Bashar Amer
▴ 20 • written 12.1 years ago by
Guest User
★ 13k
0
votes
3
replies
3.0k
views
XCMS query regarding mzXML
xcms
xcms
updated 12.5 years ago by
Laurent Gatto
1.6k • written 12.5 years ago by
Reema Singh
▴ 570
0
votes
6
replies
2.5k
views
error when loading mzR
xcms
mzR
xcms
mzR
updated 12.5 years ago by
Steve Lianoglou
★ 13k • written 12.5 years ago by
Guest User
★ 13k
0
votes
3
replies
3.9k
views
Installation of XCMS / mzR failed
cdf
xcms
BiocInstaller
cdf
xcms
BiocInstaller
updated 13.5 years ago by
James W. MacDonald
68k • written 13.5 years ago by
Johannes Raffler
▴ 20
0
votes
3
replies
2.8k
views
XCMS / mzR / Rcpp dependency issue
xcms
xcms
updated 13.6 years ago by
Laurent Gatto
1.6k • written 13.6 years ago by
Uwe Schmitt
▴ 30
0
votes
1
reply
2.0k
views
problems installing xcms package
cdf
xcms
cdf
xcms
updated 13.8 years ago by
Dan Tenenbaum
★ 8.2k • written 13.8 years ago by
Juliet Hannah
▴ 360
0
votes
1
reply
1.3k
views
help
cdf
xcms
BiocInstaller
cdf
xcms
BiocInstaller
updated 14.1 years ago by
Steve Lianoglou
★ 13k • written 14.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.6k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
15.9 years ago
Gabriella Rustici
▴ 60
0
votes
0
replies
1.4k
views
problem loading xcms in R after normal installation
xcms
xcms
16.0 years ago
Gertsman, Ilya
▴ 10
0
votes
1
reply
2.1k
views
installing xcms package for R 64-bit
GO
Cancer
cdf
xcms
GO
Cancer
cdf
xcms
updated 16.1 years ago by
Benton, Paul
▴ 10 • written 16.1 years ago by
Mathe, Ewy NIH/NCI [F]
▴ 40
0
votes
1
reply
1.3k
views
Too many open files error with groupName = "all" in biocLite() call on Apple OS X
Cancer
Breast
Biobase
AnnBuilder
xcms
Cancer
Breast
Biobase
AnnBuilder
xcms
updated 19.5 years ago by
Seth Falcon
★ 7.4k • written 19.5 years ago by
Steven McKinney
▴ 310
79 results • Page
2 of 2
Recent ...
Replies
Comment: Combining two proteomics datasets with limpa
by
Andrew Pattison
• 0
Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
You just need the mouse identifier (controls baseline) and the group specific allelic effect.
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Julia Broadbent
• 0
Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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