Showing : affymetrixchip • reset
2
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460
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 9 months ago by 68k • written 9 months ago by • 0
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348
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Remove Control Probes from Affymetrix Human Gene 1.0 ST Array probeset version
AffymetrixDataTestFiles AffymetrixChip
14 months ago drexjaramel • 0
0
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4
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968
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Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
17 months ago Efra • 0
0
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1
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1.1k
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Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata hgu133plus2.db AffymetrixChip
updated 2.1 years ago by ★ 4.9k • written 2.1 years ago by ▴ 20
1
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2
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999
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Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip
2.2 years ago alexia.brunel • 0
1
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4
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1.3k
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How to annotate mir4.1 arrays?
AffymetrixChip miRNA oligo
2.3 years ago • updated 2.1 years ago richardallenfriedmanbrooklyn ▴ 30
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0
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915
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Volcano plot
limma AffymetrixChip
2.3 years ago e.gunaut • 0
2
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2
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1.1k
views
Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
2.4 years ago Abdul ▴ 20
1
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1
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1.3k
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip RMA
updated 2.8 years ago by ★ 6.6k • written 2.8 years ago by ▴ 20
2
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2
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957
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.9 years ago evan.j.williams ▴ 10
2
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2
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1.3k
views
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
pd.hugene.1.0.st.v1 oligo AffymetrixChip
3.2 years ago Yang Shi ▴ 10
2
votes
5
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1.6k
views
Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
pd.hugene.1.0.st.v1 oligo AffymetrixChip
3.2 years ago Yang Shi ▴ 10
2
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4
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1.7k
views
Robust Multi-array Average could get negative value or not?
pd.hg.u219 oligo AffymetrixChip
3.3 years ago Yang Shi ▴ 10
4
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10
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2.8k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
3.3 years ago Yang Shi ▴ 10
0
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2
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1.2k
views
How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
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4
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1.3k
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
3.4 years ago Haoran • 0
2
votes
2
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1.4k
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
4.3 years ago geoffrey ▴ 10
0
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1
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1.2k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
3
votes
2
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1.9k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
0
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4
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2.7k
views
HUgene 2.0 analyses heatmap
hugene20 heatmap affymetrixchip
updated 10.3 years ago by ▴ 130 • written 10.3 years ago by ▴ 10
2
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5
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3.5k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
10.4 years ago aswathym ▴ 10
0
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0
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1.5k
views
Correst use of GeneOverlap R Package
GeneOverlap DEGgenes affymetrixchip bioconductor
10.4 years ago svlachavas ▴ 840
1
vote
3
replies
1.9k
views
BioNet package network analysis important questions for tutorial
BioNet bioconductor affymetrixchip network analysis
10.5 years ago svlachavas ▴ 840
5
votes
9
replies
4.1k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor expresiondataset affymetrixchip differential gene expression
10.5 years ago svlachavas ▴ 840
1
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4
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3.9k
views
GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis
10.5 years ago svlachavas ▴ 840
3
votes
11
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4.1k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor mas5 perfectmatch affymetrixchip filter
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 840
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0
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2.6k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy affymetrix affymetrics affymetrixchip
10.6 years ago neverstop • 0
0
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1
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2.2k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ▴ 100
28 results • Page 1 of 1
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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