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1.2k

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batch limma

updated 15 months ago by ATpoint ★ 4.1k • written 15 months ago by luca.s ▴ 50

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978

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BatchEffect batch RNASeqR formula DESeq2

updated 20 months ago by Michael Love 42k • written 21 months ago by estafana.t98 • 0

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1.3k

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Batch BatchEffect DESeq2

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by dequattro.concetta ▴ 10

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1.0k

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batch RNASeq BatchEffect DESeq2

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Jonas • 0

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3.4k

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deseq2 comparison batch

updated 3.4 years ago by Joana.silvestre • 0 • written 4.7 years ago by amin.ghareyazi • 0

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948

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limma BatchEffect duplicatecorrelation block batch

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by Katherine • 0

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1.8k

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deseq2 batch removebatch effect

updated 3.6 years ago by Michael Love 42k • written 3.6 years ago by Bine ▴ 40

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1.7k

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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4.3k

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limma deseq2 batch design batch effect

3.7 years ago Pietro ▴ 40

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687

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deseq2 miRNASeq designmatrix Batch

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by anshulmbi • 0

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965

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deseq2 RUV batch highly variable genes

updated 4.2 years ago by tmms • 0 • written 4.2 years ago by f_pardow • 0

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1.2k

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deseq2 ruv batch

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by r.tom • 0

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983

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deseq2 batch

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by Solarion • 0

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1.6k

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limma paired batch

updated 4.7 years ago by Gordon Smyth 50k • written 4.7 years ago by english.server ▴ 20

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17k

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deseq2 batch effect batch

5.0 years ago • updated 4.9 years ago Mozart ▴ 30

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774

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deseq2 batch sva t-test design matrix

updated 5.0 years ago by Michael Love 42k • written 5.0 years ago by Mozart ▴ 30

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1.4k

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edger limma design contrasts batch

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Pietro ▴ 40

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958

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deseq2 batch

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by sherajilir • 0

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946

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DESeq2 Edgeseq batch

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by AZ ▴ 30

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2.5k

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deseq2 ruvseq cookscutoff covariates batch

7.5 years ago j.viana • 0

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1.1k

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rna-seq edgeR limma removebatcheffect() batch

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by Ekarl2 ▴ 80

21 results • Page 1 of 1

Recent ...

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Comment: error by NATASHA • 0

Please ignore, i didnt copy all the scrip

Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…