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How does limma t-test work?
Bayesian limma Bayesian limma
updated 11.7 years ago by 65k • written 11.7 years ago by ▴ 160
3
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
12.9 years ago Richard Friedman ★ 2.0k
3
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1.4k
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 5.5 years ago by 50k • written 5.5 years ago by ▴ 10
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1.3k
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adjusted p values of the genes in the intersection of Venn
Bayesian limma Bayesian limma
17.4 years ago Gordon Smyth 50k
1
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3
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1.4k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 6.2 years ago by ▴ 10 • written 6.2 years ago by ▴ 10
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2
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1.0k
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 50
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1.4k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
12.5 years ago Richard Friedman ★ 2.0k
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0
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1.2k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
12.1 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.3k
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Job Posting in Biostatistics/Statistics
Bayesian Survival Cancer PROcess ASSET Bayesian Survival Cancer PROcess ASSET
updated 21.4 years ago by ▴ 80 • written 21.4 years ago by ▴ 10
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1.0k
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normalization and clustering etc...
Bayesian Clustering Leukemia affy PROcess DOSE Bayesian Clustering Leukemia affy PROcess
21.1 years ago Phguardiol@aol.com ▴ 720
0
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4
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1.3k
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How to get started with bioconductor ?
Bayesian limma Bayesian limma
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 20
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1.0k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.5 years ago Wolfgang Huber ★ 13k
0
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0
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841
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Question about Microarray before/after treatment, Paired Analysis
Microarray Bayesian Microarray Bayesian
20.0 years ago Haiyan Wu ▴ 10
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832
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Replicates within array
Microarray Normalization Bayesian Microarray Normalization Bayesian
19.8 years ago Hua Weng ▴ 60
0
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1
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981
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blue fuse output and limma
Bayesian Bayesian
updated 19.7 years ago by 50k • written 19.7 years ago by ▴ 150
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895
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Cancer limma bridge Bayesian Cancer limma bridge
19.7 years ago Richard Friedman ★ 2.0k
0
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3
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1.1k
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.7 years ago Gordon Smyth 50k
0
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0
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668
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which library - identify gene expression markers using Bayesian
Bayesian Bayesian
19.6 years ago Liu, Xin ▴ 130
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961
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identify gene expression markers using Bayesian
Bayesian Bayesian
19.6 years ago Liu, Xin ▴ 130
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0
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1.4k
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CyberT: Paired Bayes t-test (Bayes corrected p-values)
Normalization Bayesian Normalization Bayesian
18.8 years ago Gordon Smyth 50k
0
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0
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905
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help with bayesian network
Network Bayesian Network Bayesian
18.6 years ago goldoni ▴ 10
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3
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1.7k
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
18.2 years ago Pete ▴ 70
0
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3
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2.6k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
0
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0
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1.2k
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PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
18.1 years ago Ivo Kwee ▴ 30
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1.3k
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PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
18.0 years ago Ivo Kwee ▴ 30
0
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3
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1.4k
views
Bayesian networks in BioC
Bayesian Bayesian
updated 17.9 years ago by ★ 2.4k • written 17.9 years ago by ▴ 320
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1.9k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
17.7 years ago Gordon Smyth 50k
0
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2
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1.1k
views
analysis with no replication
Bayesian limma Bayesian limma
updated 16.9 years ago by ▴ 390 • written 16.9 years ago by ▴ 450
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0
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979
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Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
16.6 years ago Naomi Altman ★ 6.0k
0
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1
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1.3k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
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0
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740
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Questions of package "deal"
Network Bayesian Network Bayesian
16.1 years ago Tu Kang ▴ 20
0
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1
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1.3k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 16.0 years ago by ★ 1.6k • written 16.0 years ago by 25k
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3
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1.6k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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1.0k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
15.2 years ago Kellie J. Archer, Ph.D. ▴ 120
0
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1
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1.1k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
14.9 years ago Mark Robinson ★ 1.1k
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0
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868
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Help baySeq
Bayesian edgeR Bayesian edgeR
12.2 years ago Tina Asante Boahene ▴ 100
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1.2k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.5 years ago Patrick Aboyoun ★ 1.6k
0
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1.1k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
14.3 years ago M. Carmen Ruiz de Villa ▴ 10
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1.0k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 14.2 years ago by ▴ 190 • written 14.2 years ago by ▴ 10
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0
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17k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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0
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971
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.7 years ago Orfe, Lisa ▴ 20
0
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1
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1.0k
views
Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.7 years ago Gordon Smyth 50k
0
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0
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1.4k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.5 years ago Martin Morgan 25k
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0
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1.3k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
13.2 years ago Santosh Patnaik ▴ 30
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2.2k
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
12.9 years ago João Daniel Nunes Duarte ▴ 30
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0
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1.1k
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
12.8 years ago Richard Friedman ★ 2.0k
0
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3
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1.1k
views
Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ★ 2.0k
0
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10
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1.7k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 2.0k
0
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0
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1.3k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
12.5 years ago shirley zhang ★ 1.0k
0
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2
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1.3k
views
Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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