Showing : bayesian • reset
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
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How to get started with bioconductor ?
Bayesian limma Bayesian limma
updated 20.7 years ago by 50k • written 20.7 years ago by ▴ 20
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Classification limma bridge Bayesian Classification limma bridge
19.8 years ago Gordon Smyth 50k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 6.2 years ago by ▴ 10 • written 6.3 years ago by ▴ 10
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
18.2 years ago Pete ▴ 70
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6
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 12.2 years ago by ▴ 290 • written 12.2 years ago by ★ 2.0k
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Bayesian networks in BioC
Bayesian Bayesian
updated 18.0 years ago by ★ 2.4k • written 18.0 years ago by ▴ 320
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 12.5 years ago by 6.7k • written 12.5 years ago by ★ 2.0k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ★ 2.0k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 12.5 years ago by 21k • written 12.5 years ago by ▴ 20
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 12.5 years ago by ▴ 40 • written 12.5 years ago by 50k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago • updated 15.5 years ago Patrick Aboyoun ★ 1.6k
7
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 11.7 years ago by 65k • written 11.7 years ago by ▴ 160
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 6.3 years ago by ▴ 10 • written 6.3 years ago by ▴ 10
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
14.9 years ago Mark Robinson ★ 1.1k
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 50
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 2 days ago by 50k • written 5.6 years ago by ▴ 10
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 14.2 years ago by ▴ 190 • written 14.3 years ago by ▴ 10
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blue fuse output and limma
Bayesian Bayesian
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 150
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analysis with no replication
Bayesian limma Bayesian limma
updated 16.9 years ago by ▴ 390 • written 16.9 years ago by ▴ 450
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.7 years ago Gordon Smyth 50k
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1.3k
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Job Posting in Biostatistics/Statistics
Bayesian Survival Cancer PROcess ASSET Bayesian Survival Cancer PROcess ASSET
updated 21.5 years ago by ▴ 80 • written 21.5 years ago by ▴ 10
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 16.0 years ago by ★ 1.6k • written 16.0 years ago by 25k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.3 years ago Wolfgang Huber ★ 13k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
14.5 years ago Patrick Aboyoun ★ 1.6k
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
14.3 years ago M. Carmen Ruiz de Villa ▴ 10
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
13.9 years ago David Lyon ▴ 340
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
13.7 years ago Orfe, Lisa ▴ 20
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.6 years ago Martin Morgan 25k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
13.2 years ago Santosh Patnaik ▴ 30
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
12.9 years ago João Daniel Nunes Duarte ▴ 30
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
12.8 years ago Richard Friedman ★ 2.0k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
12.5 years ago shirley zhang ★ 1.0k
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
11.9 years ago Siebourg Juliane ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
11.6 years ago Porterfield, Toni ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.1 years ago floriandeckert ▴ 30
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Help baySeq
Bayesian edgeR Bayesian edgeR
12.2 years ago Tina Asante Boahene ▴ 100
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
17.0 years ago Seth Falcon ★ 7.4k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
13.7 years ago Orfe, Lisa ▴ 20
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
13.0 years ago Xiaohui Wu ▴ 280
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
12.5 years ago Richard Friedman ★ 2.0k
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
12.1 years ago Dan Tenenbaum ★ 8.2k
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normalization and clustering etc...
Bayesian Clustering Leukemia affy PROcess DOSE Bayesian Clustering Leukemia affy PROcess
21.1 years ago Phguardiol@aol.com ▴ 720
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1.0k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.6 years ago Wolfgang Huber ★ 13k
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0
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846
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Question about Microarray before/after treatment, Paired Analysis
Microarray Bayesian Microarray Bayesian
20.1 years ago Haiyan Wu ▴ 10
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837
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Replicates within array
Microarray Normalization Bayesian Microarray Normalization Bayesian
19.8 years ago Hua Weng ▴ 60
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902
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Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian Cancer limma bridge Bayesian Cancer limma bridge
19.8 years ago Richard Friedman ★ 2.0k
0
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681
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which library - identify gene expression markers using Bayesian
Bayesian Bayesian
19.7 years ago Liu, Xin ▴ 130
50 results • Page 1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results by ATpoint ★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results by sajadahmad41454 • 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results by swbarnes2 ★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
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