Showing : bayesian • reset
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 19 months ago by 53k • written 7.2 years ago by ▴ 10
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
7.7 years ago floriandeckert ▴ 30
1
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3
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2.0k
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Differential expressiong with two groups in BASiCS
BASiCS single-cell bayesian differential expression
updated 7.8 years ago by ▴ 10 • written 7.8 years ago by ▴ 10
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2
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1.9k
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BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS bayesian single cell scrnaseq
updated 7.8 years ago by ▴ 10 • written 7.8 years ago by ▴ 10
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Post Doctoral Openings at University of Pittsburgh
Bayesian HIV Bayesian HIV
13.1 years ago Porterfield, Toni ▴ 10
7
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How does limma t-test work?
Bayesian limma Bayesian limma
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 160
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nem package, nem.BN learning with 'continuous_Baysian' not possible
Network Bayesian nem Network Bayesian nem
13.4 years ago Siebourg Juliane ▴ 10
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Bioconductor 2.10 is released
Transcription Sequencing Microarray Annotation Normalization Visualization Network Bayesian
13.7 years ago Dan Tenenbaum ★ 8.2k
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6
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.8 years ago by ▴ 290 • written 13.8 years ago by ★ 2.0k
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Help baySeq
Bayesian edgeR Bayesian edgeR
13.8 years ago Tina Asante Boahene ▴ 100
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2.7k
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TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization Bayesian edgeR baySeq DESeq Normalization Bayesian edgeR baySeq DESeq
updated 14.1 years ago by ▴ 40 • written 14.1 years ago by 53k
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1.6k
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Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 20
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1.6k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
14.1 years ago shirley zhang ★ 1.0k
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10
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2.5k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 14.1 years ago by 6.7k • written 14.1 years ago by ★ 2.0k
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3
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1.6k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 14.1 years ago by ★ 4.2k • written 14.1 years ago by ★ 2.0k
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1.7k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
14.1 years ago Richard Friedman ★ 2.0k
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1.3k
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RELATED TO CLUSTERING
Bayesian Bayesian
updated 14.4 years ago by 21k • written 14.4 years ago by ▴ 50
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Pathway specific gene lists in SPIA
Bayesian Cancer Bayesian Cancer
14.4 years ago Richard Friedman ★ 2.0k
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2.5k
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Rgraphviz plot of bnlearn object with text too big
Network Bayesian Rgraphviz Network Bayesian Rgraphviz
14.5 years ago João Daniel Nunes Duarte ▴ 30
4
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
updated 7 months ago by • 0 • written 14.5 years ago by ★ 2.0k
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Filtering out tags with low counts in DESeq and EgdeR?
Bayesian limma edgeR DESeq Bayesian limma edgeR DESeq
14.6 years ago Xiaohui Wu ▴ 280
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1.6k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
14.8 years ago Santosh Patnaik ▴ 30
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.1 years ago Martin Morgan 25k
0
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Limma script - Opinions requested
Annotation Bayesian limma PROcess Annotation Bayesian limma PROcess
15.3 years ago Orfe, Lisa ▴ 20
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1
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1.3k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.3 years ago Gordon Smyth 53k
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1.2k
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Limma script - Opinions requested
Bayesian limma PROcess Bayesian limma PROcess
15.3 years ago Orfe, Lisa ▴ 20
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0
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19k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.5 years ago David Lyon ▴ 340
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2
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1.4k
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Removing genes from linear model fit advice sought
Microarray Bayesian Microarray Bayesian
updated 15.8 years ago by ▴ 190 • written 15.8 years ago by ▴ 10
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Bioconductor Digest, Vol 83, Issue 23
Bayesian ROC graph limma Bayesian ROC graph limma
15.9 years ago M. Carmen Ruiz de Villa ▴ 10
0
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
16.1 years ago Patrick Aboyoun ★ 1.6k
0
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1.4k
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Fwd: Presentation 19th June
Bayesian convert Bayesian convert
16.5 years ago Mark Robinson ★ 1.1k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
16.8 years ago Kellie J. Archer, Ph.D. ▴ 120
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3
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2.0k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.1 years ago Patrick Aboyoun ★ 1.6k
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1
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1.7k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.6 years ago by ★ 1.6k • written 17.6 years ago by 25k
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1.0k
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Questions of package "deal"
Network Bayesian Network Bayesian
17.7 years ago Tu Kang ▴ 20
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2.0k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
17.9 years ago Jean Yee Hwa Yang ▴ 130
0
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1.6k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.2 years ago Hervé Pagès 16k
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Problem when comparing a large experimental group versus a small control group by using SAM
Bayesian Bayesian
18.2 years ago Naomi Altman ★ 6.0k
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2
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1.5k
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analysis with no replication
Bayesian limma Bayesian limma
updated 18.5 years ago by ▴ 390 • written 18.5 years ago by ▴ 450
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1.4k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.6 years ago Seth Falcon ★ 7.4k
1
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1.6k
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adjusted p values of the genes in the intersection of Venn
Bayesian limma Bayesian limma
19.0 years ago Gordon Smyth 53k
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2.2k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.3 years ago Gordon Smyth 53k
0
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3
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1.8k
views
Bayesian networks in BioC
Bayesian Bayesian
updated 19.5 years ago by ★ 2.4k • written 19.5 years ago by ▴ 320
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1.5k
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PhD Student Position in Statistics on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
19.6 years ago Ivo Kwee ▴ 30
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1.5k
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PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray Bayesian Microarray Bayesian
19.7 years ago Ivo Kwee ▴ 30
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.8 years ago McGee, Monnie ▴ 300
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3
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2.1k
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Timeseries loop design analysis using Limma or Maanova?
Bayesian Clustering TimeCourse timecourse oligo Bayesian Clustering TimeCourse timecourse
19.8 years ago Pete ▴ 70
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1.2k
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help with bayesian network
Network Bayesian Network Bayesian
20.2 years ago goldoni ▴ 10
0
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0
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1.6k
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CyberT: Paired Bayes t-test (Bayes corrected p-values)
Normalization Bayesian Normalization Bayesian
20.4 years ago Gordon Smyth 53k
0
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0
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1.2k
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identify gene expression markers using Bayesian
Bayesian Bayesian
21.3 years ago Liu, Xin ▴ 130
61 results • Page 1 of 2
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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