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DESeq2 and betaPrior
deseq2 biostatistics
6.7 years ago Elena Grassi ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
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limma with interaction term
R biostatistics limma Epigenetics
12 weeks ago • updated 10 weeks ago Jitendra ▴ 10
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Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.1 years ago g.atla ▴ 10
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Job: Data scientist/bioinformatician - Paris
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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7.9 years ago • updated 7.8 years ago Frank Kramer ▴ 60
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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6.3 years ago Federico Marini ▴ 150
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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6.2 years ago claudia.lopez-matamoros • 0
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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Job: Statistical Research Associate
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6.0 years ago Fred Hutch (Recruiting) ▴ 40
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Job: PhD and PostDoc position in computational cancer biology in Milan
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5.5 years ago marschaefer • 0
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Job: Biostatistics Scientist II - high throughput single-cell assays
Biostatistics Job
5.3 years ago careers • 0
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Job: Biostatistics Analyst II - high throughput single-cell assays
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.1 years ago Patrick Kimes ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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4.6 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
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4.3 years ago Tommi Suvitaival ▴ 10
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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4.2 years ago Patrick Kimes ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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2.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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2.2 years ago helene.ruffieux • 0
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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23 months ago helene.ruffieux • 0
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Job: Postdoctoral positions in drug discovery and genome data science
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5.2 years ago Thomas Girke ★ 1.7k
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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4.8 years ago Michael Prummer • 0
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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8.9 years ago Simon Anders ★ 3.7k
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by nbay13 • 0
A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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