Bioconductor Boxplot

Showing : boxplot • reset

votes

replies

4.3k

views

t.test boxplot limma anova

20 months ago Chris ▴ 20

votes

961

views

boxplot ggplot2

updated 2.8 years ago by ATpoint ★ 5.0k • written 2.8 years ago by Sooni ▴ 10

votes

replies

1.3k

views

knitr boxplot

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by poojitha.stemcell ▴ 10

votes

1.5k

views

boxplot bioconductor R error

6.0 years ago l154359 • 0

votes

replies

2.2k

views

boxplot reads fastq sequencing rsubread

updated 6.5 years ago by Wei Shi ★ 3.6k • written 6.5 years ago by Raito92 ▴ 60

votes

replies

1.1k

views

affy boxplot

6.7 years ago pratikshasharma47 • 0

vote

1.0k

views

boxplot affymetrix data diferential expression

6.7 years ago pratikshasharma47 • 0

votes

replies

1.1k

views

boxplot software error

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by Raito92 ▴ 60

votes

replies

6.3k

views

VST deseq2 boxplot rnaseq

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by Konstantinos Yeles ▴ 90

votes

replies

1.3k

views

boxplot

updated 8.7 years ago by Peter Langfelder ★ 3.0k • written 8.7 years ago by farahqureshi5 • 0

votes

replies

5.3k

views

affy package boxplot hgu133plus2 oligo package

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by Javier Pérez Florido ▴ 840

vote

replies

2.7k

views

edgeR boxplot

8.8 years ago snowru • 0

votes

replies

2.8k

views

gviz boxplot

updated 9.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.6 years ago by enricoferrero ▴ 680

vote

replies

2.5k

views

boxplot microarray pd.hugene.2.0.st

10.7 years ago • updated 10.6 years ago kanacska ▴ 10

votes

replies

1.5k

views

Rle boxplot

10.9 years ago Johannes Rainer ★ 2.1k

15 results • Page 1 of 1

Recent ...

Replies

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130