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Answer: biomaRt has encountered an unknown server error while using getLDS
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Mike Smith
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There's a lot to unpack here!
First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter
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adripel
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Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba
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Mallory
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Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
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Anthony
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I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty
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Try
axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
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