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Showing :
boxplot
•
reset
2
votes
6
replies
1.8k
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
7 months ago
Chris
▴ 20
0
votes
1
reply
723
views
How to add pvalue to boxplot?
boxplot
ggplot2
updated 21 months ago by
ATpoint
★ 4.5k • written 21 months ago by
Sooni
▴ 10
0
votes
5
replies
1000
views
knitr error in sort.int - unable to knit a chunk with boxplot codes
knitr
boxplot
updated 4.9 years ago by
James W. MacDonald
67k • written 4.9 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.2k
views
boxplot Error in Bioconductor
boxplot
bioconductor
R
error
4.9 years ago
l154359
• 0
2
votes
3
replies
1.7k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 5.5 years ago by
Wei Shi
★ 3.6k • written 5.5 years ago by
Raito92
▴ 60
0
votes
0
replies
851
views
How to color samples in boxplot based on treatment or control using covdesc file
affy
boxplot
5.6 years ago
pratikshasharma47
• 0
1
vote
1
reply
805
views
Boxplot of merged data set ,colored according to control vs treatment
boxplot
affymetrix data
diferential expression
5.6 years ago
pratikshasharma47
• 0
2
votes
2
replies
801
views
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
boxplot
software error
updated 5.6 years ago by
Gordon Smyth
51k • written 5.6 years ago by
Raito92
▴ 60
7
votes
11
replies
5.4k
views
Comparing means of VST tranformed RNA-Seq counts in different groups of samples with boxplots
VST
deseq2
boxplot
rnaseq
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
Konstantinos Yeles
▴ 80
0
votes
2
replies
1.1k
views
understanding the meaning boxplot
boxplot
updated 7.7 years ago by
Peter Langfelder
★ 3.0k • written 7.7 years ago by
farahqureshi5
• 0
0
votes
4
replies
4.8k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package
boxplot
hgu133plus2
oligo package
updated 7.7 years ago by
James W. MacDonald
67k • written 7.7 years ago by
Javier Pérez Florido
▴ 840
1
vote
4
replies
2.2k
views
EdgeR differentially expressed genes vs normal boxplot visualization
edgeR
boxplot
7.8 years ago
snowru
• 0
3
votes
10
replies
2.3k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 8.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
enricoferrero
▴ 660
1
vote
8
replies
2.0k
views
boxplot, microarray, hugene 2.0 st
boxplot
microarray
pd.hugene.2.0.st
9.6 years ago
kanacska
▴ 10
0
votes
2
replies
1.3k
views
boxplot on an Rle object?
Rle
boxplot
9.8 years ago
Johannes Rainer
★ 2.1k
15 results • Page
1 of 1
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Replies
Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units
by
elozanoe
• 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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