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cluster
•
reset
1
vote
7
replies
1.4k
views
Adding geneID to list of gene locus IDs
cluster
OrgDb
clusterProfiler
written 17 months ago by
Chruut
• 0
2
votes
4
replies
4.3k
views
Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
8.8 years ago
svlachavas
▴ 830
1
vote
2
replies
1.4k
views
Counting the no. of mutational clusters of each class, or kataegis
cluster
8.3 years ago
niavarani
▴ 10
0
votes
6
replies
1.2k
views
Error when trying to access BiomaRt from a cluster
biomaRt
R
cluster
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
camerond
• 0
0
votes
2
replies
2.0k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.1 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.1 years ago by
thomas.dobrenel
• 0
1
vote
2
replies
1.8k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
reinepapillon
• 0
0
votes
5
replies
1.3k
views
enrichKEGG function error
cluster
clusterProfiler
KEGG
12 months ago • updated 11 months ago
ruba-mahmoud
• 0
4
votes
3
replies
1.5k
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran
Clustering
SingleCellExperiment
annotate
cluster
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
achoppe
▴ 10
0
votes
1
reply
2.0k
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network
cluster
WGCNA
RNASeq
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
chiwut.wong
• 0
0
votes
3
replies
3.0k
views
RnBeads cannot locate libjasper.so.1
rnbeads
gs
ghostscript
shared libraries
cluster
8.8 years ago
bmreilly
• 0
0
votes
0
replies
701
views
using gene expression matrix for TCseq package to cluster genes
TCseq
microwarray
cluster
counts
normalization
4.8 years ago
bioyas
▴ 10
0
votes
0
replies
606
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
18 months ago
Javier
• 0
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.2 years ago
rna seq
▴ 90
0
votes
0
replies
762
views
Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq
Clustering
cluster
WGCNA
2.0 years ago
chiwut.wong
• 0
14 results • Page
1 of 1
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Replies
Comment: putting my own expression data in deseq2
by
ATpoint
★ 4.1k
> directly from GEOquery I can tell you that GEOquery retrieves array data not appropriate for DESeq2. For anything else make your questi…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
Votes
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
Comment: Why p value inconsistent when using different number of pathway score?
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