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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
8 weeks ago Maria Doyle ▴ 90
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
12 weeks ago Maria Doyle ▴ 90
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
3 months ago Maria Doyle ▴ 90
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556
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
3 months ago Maria Doyle ▴ 90
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376
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
3 months ago Maria Doyle ▴ 90
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
4 months ago Maria Doyle ▴ 90
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299
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
4 months ago Maria Doyle ▴ 90
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
4 months ago Maria Doyle ▴ 90
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 90
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
6 months ago Maria Doyle ▴ 90
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
7 months ago Maria Doyle ▴ 90
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News: BioC2024 deadlines approaching
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7 months ago Maria Doyle ▴ 90
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
9 months ago Maria Doyle ▴ 90
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News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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19 months ago Maria Doyle ▴ 90
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
19 months ago Maria Doyle ▴ 90
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727
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training Bioconductor Event Community Tutorial
20 months ago Maria Doyle ▴ 90
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
20 months ago Maria Doyle ▴ 90
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
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News: BioC2023 abstract submission is now open!
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News: EuroBioC2023 abstract submission is open!
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News: Bioconductor call for events!
Bioconductor events community
22 months ago Maria Doyle ▴ 90
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
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News: Seeking members for BioC2023 organizing committee
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23 months ago Maria Doyle ▴ 90
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News: Seeking Outreachy interns and project proposals
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News: Translation Hackathon (community event) announcement
event translation community
2.5 years ago kozo.nishida • 0
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1.1k
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Job: Bioconductor Community Manager
Community Teaching Bioconductor
2.6 years ago • updated 2.5 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
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2.8 years ago shepherl 4.1k
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News: Join the Bioconductor Community Advisory Board
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2.9 years ago shepherl 4.1k
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News: Call for Community Volunteered Package Reviewers
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3.4 years ago shepherl 4.1k
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News: Nominations for Bioconductor Technical Advisory Board are open
community Bioconductor
3.6 years ago Charlotte Soneson ▴ 170
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News: Community engagement, outreach, and diversity award
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3.6 years ago shepherl 4.1k
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News: New Bioconductor Community Advisory Board Members for 2021
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3.7 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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updated 3.8 years ago by • 0 • written 3.9 years ago by ▴ 1000
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News: Community engagement and outreach award
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News: Bioconductor Community Advisory Board Members
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4.7 years ago Matthew Ritchie ▴ 1000
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News: Bioconductor Community Advisory Board Nominees
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updated 4.9 years ago by 21k • written 4.9 years ago by ▴ 1000
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News: Results: Bioconductor Community Survey
community feedback News
4.9 years ago Matthew Ritchie ▴ 1000
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News: Bioconductor Community Survey
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5.2 years ago Matthew Ritchie ▴ 1000
40 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
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Popular Question to Jenny Drnevich ★ 2.0k
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Scholar to James W. MacDonald 67k
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