Showing : contrasts • reset
3
votes
3
replies
861
views
DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
DESeq2 contrasts
updated 11 months ago by ★ 4.8k • written 11 months ago by ▴ 10
2
votes
3
replies
804
views
edgeR, 3 x 2 design with a batch effect and contrasts
design edgeR contrasts
updated 13 months ago by 52k • written 13 months ago by • 0
0
votes
3
replies
1.3k
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 21 months ago by 68k • written 21 months ago by • 0
1
vote
2
replies
811
views
Individual DESeq2 runs versus a single DESeq2 run with contrasts produce different results
contrasts DESeq2
22 months ago jovel_juan ▴ 30
3
votes
6
replies
1.6k
views
Question about making Contrasts for comparisons and assignment of values
edgeR contrasts limma design model.matrix
2.3 years ago mohammedtoufiq91 ▴ 10
1
vote
3
replies
928
views
Limma F-statistic identical for different comparison, why?
limma F-statistic contrasts
updated 2.5 years ago by 52k • written 2.5 years ago by • 0
3
votes
8
replies
4.8k
views
DESeq2 how to specify contrast to test difference of differences
DifferentialExpression contrasts interaction DESeq2
written 3.0 years ago by ▴ 10
0
votes
3
replies
1.9k
views
limma voom contrasts
contrasts limma voom
updated 3.1 years ago by 52k • written 3.1 years ago by ▴ 90
0
votes
1
reply
969
views
DESeq2 2x3 design contrast question
DESeq2 contrasts
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
0
votes
2
replies
1.2k
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limma voom; fitted lines, factors that aren't of interest, and hypothesis testing
topTable voom contrasts
3.6 years ago James • 0
0
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3
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1.4k
views
DESeq2: difficulty with contrasts and main effects
DESeq2 phyloseq contrasts
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
2
votes
8
replies
2.7k
views
DESeq2 numbers of DEGs not consistent with PCA plot
DifferentialExpression DESeq2 contrasts
3.9 years ago Jane ▴ 10
3
votes
8
replies
1.7k
views
Same contrasts returning different edgeR results
edger limma contrasts DGE
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
0
votes
1
reply
1.3k
views
DESeq2 - how to run contrasts leaving out one factor, not just using the reference?
deseq2 contrasts reference level
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
0
votes
0
replies
894
views
EdgeR: Transforming coefficients before testing for differential expression
edger contrasts model.matrix circadian
5.4 years ago ingerslev • 0
0
votes
1
reply
1.4k
views
DESeq2 very complex design - how extract contrasts of interest?
DESeq2 RNA-Seq Multifactorial Design GLM Contrasts
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
2
votes
3
replies
1.7k
views
DESeq2 2x2 factorial design: find genes unique to factor A?
deseq2 deseq differential expression contrasts
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 180
0
votes
4
replies
1.3k
views
Setting up contrasts with 'limma', patient data, small number of repeats
limma nanostring contrasts
updated 5.6 years ago by 52k • written 5.6 years ago by • 0
0
votes
1
reply
878
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
3
votes
5
replies
1.8k
views
Experimental design RNAseq differential expression
edger limma design contrasts batch
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 40
2
votes
6
replies
1.5k
views
Making sense out of makeContrasts and using coefficents for contrasts
edger contrasts
updated 6.2 years ago by 52k • written 6.2 years ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR by Mengjun • 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR by Mengjun • 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R by Charlie • 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0
https://www.www-njmcdirect.run/
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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