Showing : crlmm • reset
11
votes
23
replies
2.6k
views
crlmm support for Illumina arrays with no annotation package?
crlmm QCarray annotation
updated 4.3 years ago by • 0 • written 4.5 years ago by ▴ 30
2
votes
4
replies
1.6k
views
Crlmm HumanOmniExpress-24v1 Annotation not available
crlmm
updated 5.9 years ago by • 0 • written 8.7 years ago by ▴ 370
1
vote
5
replies
1.9k
views
CRLMM on Illumina Human1Mv1_C chips
crlmm illumina beadarraysnp
updated 9.2 years ago by ▴ 1000 • written 9.2 years ago by ▴ 30
1
vote
1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm gsa microarray illumina
written 6.0 years ago by • 0
1
vote
0
replies
1.4k
views
Recall genotypes from Illumina idat files using crlmm package
crlmm genotype
8.2 years ago nadne ▴ 10
1
vote
0
replies
949
views
crlmm package: issue with Infinium CytoSNP-850K v1.2 BeadChip platform
crlmm
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
1
vote
4
replies
1.5k
views
crlmm crossprod error, and missing files in annotation
crlmm
updated 8.7 years ago by ▴ 1000 • written 8.7 years ago by ▴ 370
1
vote
1
reply
1.4k
views
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
crlmm genotype.Illumina ff
updated 6.2 years ago by • 0 • written 7.8 years ago by ▴ 120
1
vote
1
reply
1.5k
views
CRLMM: the leading minor of order 1 is not positive definite
crlmm
7.8 years ago komal.rathi ▴ 120
1
vote
1
reply
1.3k
views
Error genotyping with CRLMM
crlmm copynumber illumina
updated 8.5 years ago by ▴ 370 • written 8.5 years ago by • 0
1
vote
6
replies
2.1k
views
Copy number analysis from Illumina 550K chip
illumina copynumber crlmm
8.5 years ago stuti.agrawal • 0
1
vote
1
reply
1.7k
views
crlmm Illumina SNP array genotyping
crlmm oligo
8.3 years ago vladhkim ▴ 10
0
votes
3
replies
1.5k
views
Error: All CEL files must be of the same type when running CRLMM
SNP crlmm SNP crlmm
updated 14.8 years ago by 6.7k • written 14.8 years ago by ▴ 50
0
votes
0
replies
729
views
Does CRLMM uses mismatched features?
SNP probe crlmm SNP probe crlmm
14.8 years ago mcoyne@boninc.com ▴ 50
0
votes
7
replies
1.4k
views
problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 14.5 years ago by ▴ 250 • written 14.5 years ago by ▴ 40
0
votes
1
reply
1.2k
views
crlmm with Illumina arrays
crlmm crlmm
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 480
0
votes
6
replies
1.5k
views
QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization oligo crlmm Normalization oligo crlmm
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 150
0
votes
1
reply
877
views
Interpretation of genotype calls from Oligo crlmm algorithm
SNP oligo crlmm SNP oligo crlmm
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 150
0
votes
0
replies
878
views
package to handle Infinium iSelect HD Custom Genotyping
SNP Normalization crlmm SNP Normalization crlmm
14.0 years ago Ramzi TEMANNI ▴ 160
0
votes
2
replies
1.0k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 13.9 years ago by 65k • written 13.9 years ago by ▴ 100
0
votes
1
reply
804
views
(no subject)
crlmm crlmm
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 60
0
votes
1
reply
903
views
crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 270
0
votes
5
replies
1.4k
views
crlmm package help for copy number affymetrix snp 6.0
SNP crlmm SNP crlmm
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 60
0
votes
1
reply
1.9k
views
Reading Illumina IDAT files
crlmm crlmm
updated 13.9 years ago by ▴ 1000 • written 13.9 years ago by ▴ 910
0
votes
1
reply
1.4k
views
beadarray illumina Human610-Quadv1_B.bpm
crlmm crlmm
updated 13.8 years ago by ▴ 1000 • written 13.8 years ago by ▴ 80
0
votes
3
replies
1.6k
views
crlmm and cluster centres error
crlmm crlmm
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 50
0
votes
3
replies
903
views
Oligo package crlmm method
SNP oligo crlmm SNP oligo crlmm
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ★ 4.3k
0
votes
2
replies
1.3k
views
Question on copy number estimation for Affymetrix SNP array 100k and 500k
SNP crlmm genoCN SNP crlmm genoCN
updated 13.6 years ago by ★ 2.4k • written 13.6 years ago by ★ 4.3k
0
votes
1
reply
1.0k
views
crlmm package and allele-specific CNV with Illumina SNP arrays
SNP crlmm SNP crlmm
updated 13.6 years ago by ▴ 250 • written 13.6 years ago by ▴ 20
0
votes
0
replies
710
views
update of crlmm package in BioC 2.7
crlmm crlmm
13.5 years ago Rob Scharpf ▴ 250
0
votes
0
replies
1.1k
views
Illumina CanineHD CNV & crlmm?
GO cdf affy crlmm GO cdf affy crlmm
13.4 years ago Dykema, Karl ▴ 90
0
votes
0
replies
1.2k
views
Illumina CanineHD CNV & crlmm?
GO HapMap cdf affy crlmm GO HapMap cdf affy crlmm
13.4 years ago Matthew Ritchie ▴ 1000
0
votes
0
replies
750
views
CRLMM calls to forward strand genotypes?
Annotation convert crlmm Annotation convert crlmm
13.4 years ago wrighth ▴ 260
0
votes
1
reply
1.3k
views
crlmm - Infinium iSelect HD Custom Genotyping
SNP beadarray crlmm SNP beadarray crlmm
updated 13.4 years ago by ▴ 1000 • written 13.4 years ago by ▴ 20
0
votes
2
replies
1.1k
views
crlmm error in Mac OS
oligo crlmm oligo crlmm
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 10
0
votes
0
replies
710
views
Tumor and Normal samples copy number estimation with CRLMM
crlmm crlmm
13.0 years ago Sole Acha, Xavi ▴ 110
0
votes
1
reply
955
views
CRLMM warning message and null results
crlmm crlmm
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
12.6 years ago Daniel Rico ▴ 110
0
votes
0
replies
764
views
Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
12.5 years ago Benilton Carvalho ★ 4.3k
0
votes
2
replies
1.2k
views
Analysis with SnpSet object CRLMM package
crlmm crlmm
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ▴ 70
0
votes
1
reply
1.1k
views
ilumina CanineHD
cdf crlmm cdf crlmm
updated 12.3 years ago by ▴ 1000 • written 12.3 years ago by ▴ 10
0
votes
4
replies
2.3k
views
genotyping output files
PROcess SNPchip crlmm PROcess SNPchip crlmm
12.3 years ago Rafiq S. ▴ 20
0
votes
0
replies
931
views
Normalized values in oligo::crlmm and oligo::snprma don't match?
SNP Normalization oligo crlmm SNP Normalization oligo crlmm
12.0 years ago Denise Mak ▴ 10
0
votes
1
reply
1.5k
views
Copy Number Analysis across multiple SNP array plaforms
SNP Cancer crlmm ffpe SNP Cancer crlmm ffpe
updated 12.0 years ago by ▴ 210 • written 12.0 years ago by ▴ 20
0
votes
1
reply
1.2k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP oligo crlmm SNP oligo crlmm
updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ▴ 840
0
votes
1
reply
1.2k
views
crlmm Illumina cdfName "human1mv1c" not valid
crlmm crlmm
updated 11.8 years ago by ▴ 250 • written 11.8 years ago by ▴ 10
0
votes
3
replies
4.7k
views
Translating AB/BB/AA into a SNP with Illumina data
SNP crlmm SNP crlmm
updated 11.8 years ago by ▴ 870 • written 11.8 years ago by ▴ 480
0
votes
0
replies
1.1k
views
NAs in snp.rhs.tests
SNP illuminaHumanv1 affy crlmm SNP illuminaHumanv1 affy crlmm
11.6 years ago maria traka IFR ▴ 30
0
votes
1
reply
1.5k
views
Crlmm package
SNP Annotation Normalization crlmm SNP Annotation Normalization crlmm
updated 11.2 years ago by ▴ 1000 • written 11.2 years ago by ▴ 400
0
votes
1
reply
793
views
how to use the confs value in crlmm
crlmm crlmm
updated 11.2 years ago by ★ 4.3k • written 11.2 years ago by ★ 13k
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
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