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deseq
•
reset
1
vote
6
replies
4.0k
views
about DEseq for spike-in datasets
normalization
deseq
10.1 years ago
gan.haiyun
• 0
2
votes
4
replies
2.9k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 10.1 years ago by
Ryan C. Thompson
★ 7.9k • written 10.1 years ago by
matt.arno
• 0
3
votes
4
replies
4.5k
views
Variance filtering prior to RNA-seq differential expression
sequencing
deseq
limma
updated 10.2 years ago by
Gordon Smyth
53k • written 10.2 years ago by
chris86
▴ 420
8
votes
2
replies
3.6k
views
Statistical analysis of Spectral count data : edgeR, limma or others ?
spectral counts
proteomics
limma
edger
deseq
updated 10.2 years ago by
Gordon Smyth
53k • written 10.2 years ago by
eleonoregravier
▴ 70
2
votes
9
replies
8.7k
views
Multiple alignments (multi-mapped reads) and DESeq/edgeR pipeline
deseq
deseq2
edger
tophat
bowtie
10.3 years ago
ysdel
▴ 40
2
votes
5
replies
5.0k
views
Running DESeq with 1000 samples
DESeq
DESeq
updated 10.3 years ago by
Guest195
• 0 • written 11.2 years ago by
Guest User
★ 13k
2
votes
4
replies
7.9k
views
DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing
Alignment
DESeq
DESeq2
Sequencing
Alignment
DESeq
DESeq2
updated 10.3 years ago by
gaelgarcia
• 0 • written 11.3 years ago by
Guest User
★ 13k
0
votes
3
replies
2.0k
views
DESeq plotting problems
deseq
deseq2
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
yuan.qing
▴ 10
0
votes
3
replies
1.2k
views
On DESeq, Extracting specific comparisons from multifactor designs
DESeq2
deseq
updated 10.3 years ago by
Ryan C. Thompson
★ 7.9k • written 10.3 years ago by
ramiro.barrantes
▴ 10
0
votes
1
reply
2.9k
views
How to jump from DESeq to DESeq2
Deseq2
Deseq
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
Osvaldo
▴ 40
0
votes
31
replies
5.8k
views
Error in find DEXSeq package
deseq
dexseq
10.4 years ago
engr.yahya602
• 0
0
votes
1
reply
1.4k
views
DESeq: all the padjs equals to 1
deseq
updated 10.4 years ago by
Michael Love
43k • written 10.4 years ago by
15150688610
• 0
1
vote
3
replies
5.2k
views
deseq: all padj values equal to 1
deseq
padj
updated 10.4 years ago by
Michael Love
43k • written 10.7 years ago by
ccheung
• 0
1
vote
13
replies
6.3k
views
'Codetools' and 'mgcv' packages fail to update
package updates
codetools
deseq
mgcv
updated 10.4 years ago by
rodrigo_sengo
• 0 • written 10.5 years ago by
pbhamidipati
• 0
0
votes
4
replies
4.4k
views
Problem with DESeq : \"Error in FUN(newX[, i], ...) : could not find function \"locfunc\"\"
DESeq
DESeq
updated 10.5 years ago by
Wolfgang Huber
★ 13k • written 11.4 years ago by
Guest User
★ 13k
1
vote
14
replies
11k
views
DESeq Error in round(assay(se)) : non-numeric argument to mathematical function
deseq
rna-seq
10.5 years ago
rodriguez.varenka
• 0
0
votes
1
reply
1.5k
views
Subsequent analysis after PCA and sample distance matrix-Outliers?
deseq
deseq2
updated 10.5 years ago by
Michael Love
43k • written 10.5 years ago by
yg
• 0
2
votes
4
replies
9.5k
views
DESEQ2 results and contrast (and a relevel question)
deseq
deseq2
10.5 years ago
yg
• 0
6
votes
11
replies
28k
views
With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq
deseq2
updated 2.1 years ago by
Erika
• 0 • written 10.7 years ago by
c.lieftink@nki.nl
▴ 40
3
votes
5
replies
9.6k
views
DESeq2 resultsNames output
deseq
deseq2
updated 10.6 years ago by
Michael Love
43k • written 10.6 years ago by
igor
▴ 50
0
votes
1
reply
1.1k
views
Nomarlize exp data output from deseq?
deseq2
deseq
updated 10.7 years ago by
Michael Love
43k • written 10.7 years ago by
Peter
• 0
0
votes
1
reply
1.0k
views
DeSEQ for transcriptomes of pathogens
deseq
updated 10.7 years ago by
Simon Anders
★ 3.8k • written 10.7 years ago by
hwexler
• 0
2
votes
2
replies
3.6k
views
DESeq: filter out low count reads
deseq
filter
reads
10.7 years ago
ccheung
• 0
14
votes
9
replies
18k
views
How does DESeq2 handle zero counts in one condition?
deseq2
deseq
rna-seq
10.7 years ago
gavrielmatt
▴ 30
1
vote
2
replies
3.9k
views
MA Plots in DESeq vs MA Plots in DESeq2
deseq
deseq2
updated 10.7 years ago by
Michael Love
43k • written 10.7 years ago by
najami
• 0
0
votes
3
replies
1.6k
views
question about DESeq: estimateDispersions
deseq
10.7 years ago
yilongzou
• 0
0
votes
3
replies
2.6k
views
How to set the contrast in case of a design of 2 level factor and interaction term.
deseq2
deseq
rna-seq
10.8 years ago
solgakar@bi.technion.ac.il
▴ 90
0
votes
7
replies
3.2k
views
DESEQ ANODEV : A time course study
TimeCourse
timecourse
DESeq
edgeR
updated 10.8 years ago by
Gordon Smyth
53k • written 12.3 years ago by
Michael Breen
▴ 20
3
votes
14
replies
19k
views
Normalization in DESeq2
deseq2
deseq
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
solgakar@bi.technion.ac.il
▴ 90
0
votes
3
replies
2.2k
views
DESeq2: interaction controlling for genetic effects
deseq
interactions
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
rachelwright8
▴ 10
1
vote
4
replies
3.0k
views
DEseq normalization paired t-test
deseq
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
ningchaobj
• 0
2
votes
6
replies
11k
views
Estimation of dispersion in DeSeq and DeSeq2
deseq
deseq2
rnaseq
updated 10.8 years ago by
Michael Love
43k • written 10.8 years ago by
JK
▴ 10
15
votes
8
replies
12k
views
DESeq2 - Acquiring batch-corrected values for PCA and hierarchical clustering
deseq2
deseq
10.9 years ago • updated 10.8 years ago
salahm
▴ 70
1
vote
4
replies
1.8k
views
DESeq Dispersion Estimation for Classification Purpose
deseq
10.9 years ago
gokmenzararsiz
▴ 10
20
votes
15
replies
68k
views
DESeq2 output explanation
deseq
deseq2
updated 3.9 years ago by
Michael Love
43k • written 10.9 years ago by
francesca.defilippis
▴ 100
0
votes
1
reply
3.0k
views
log2foldchange cutoff is necessary
deseq
updated 10.9 years ago by
Michael Love
43k • written 10.9 years ago by
acesar
• 0
2
votes
3
replies
3.3k
views
deseq2: coding 2x2 design
deseq2
deseq
10.9 years ago
evakfisch
▴ 10
0
votes
4
replies
3.0k
views
DESeq2: Error in simpleLoess
software error
deseq
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
Iddo Ben-dov
▴ 20
1
vote
6
replies
3.6k
views
DESeq2 PCA plot on fitted values
deseq
updated 10.9 years ago by
Michael Love
43k • written 10.9 years ago by
Sachin Pundhir
• 0
0
votes
10
replies
5.1k
views
DESeq2, error: inv(): matrix appears to be singular
deseq
11.0 years ago
sandramg82
• 0
1
vote
1
reply
1.8k
views
Question about DESeq2 version updates
deseq
updated 11.0 years ago by
Michael Love
43k • written 11.0 years ago by
Yuan Hao
▴ 240
4
votes
2
replies
8.0k
views
Analyzing RNA-Seq data without replicates using DESeq
deseq
DESeq2
updated 11.0 years ago by
Michael Love
43k • written 11.0 years ago by
solgakar@bi.technion.ac.il
▴ 90
0
votes
1
reply
1.4k
views
Test Statistic in nbinomialTest in DESeq???
DESeq
updated 11.0 years ago by
Wolfgang Huber
★ 13k • written 11.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
DESeq
GO
DESeq
GO
DESeq
updated 11.1 years ago by
Steve Lianoglou
★ 13k • written 11.1 years ago by
Guest User
★ 13k
2
votes
5
replies
2.0k
views
DEXSeq update results change
Sequencing
DESeq
DEXSeq
Sequencing
DESeq
DEXSeq
11.1 years ago
António Miguel de Jesus Domingues
▴ 510
1
vote
1
reply
1.9k
views
DESeq: multi-factors testing questions
DESeq
DESeq2
DESeq
DESeq2
updated 11.1 years ago by
Michael Love
43k • written 11.1 years ago by
Yanzhu Lin
▴ 120
0
votes
4
replies
3.5k
views
Deseq2 for down stream analysis
DESeq
DESeq
updated 11.1 years ago by
Michael Love
43k • written 11.1 years ago by
Fabrice Tourre
▴ 970
0
votes
3
replies
1.4k
views
Can DESeq do this?
DESeq
DESeq
updated 11.1 years ago by
Michael Love
43k • written 11.1 years ago by
Pet Chiang
▴ 30
0
votes
7
replies
13k
views
DESeq2 basemean and log2foldchange
DESeq
DESeq
updated 11.1 years ago by
Michael Love
43k • written 11.1 years ago by
rob yang
▴ 50
0
votes
7
replies
6.1k
views
DESeq2, problems using list argument to extract results from DESeq
DESeq
DESeq
updated 11.2 years ago by
Jon Bråte
▴ 270 • written 11.2 years ago by
Guest User
★ 13k
512 results • Page
4 of 11
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Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
• 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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