Bioconductor Ensembldb

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 4 weeks ago by Shiva • 0 • written 5.5 years ago by Guido Hooiveld ★ 3.9k

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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844

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

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4.2k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 21 months ago by Recep ▴ 20

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270

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ensembldb

updated 12 days ago by James W. MacDonald 65k • written 12 days ago by Fara • 0

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804

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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567

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GO ensembldb

6 months ago Rockbar • 0

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316

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ensembldb genomei GenomeInfoDb

12 weeks ago Kai Hu ▴ 70

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504

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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2.6k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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228

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by ramonmassoni ▴ 10

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1.4k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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1.5k

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ensembldb biomaRt

updated 9 months ago by Michael Love 41k • written 9 months ago by Benjamin ▴ 30

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970

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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173

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ensembldb transcriptome genome coordinateconversion

updated 5 weeks ago by Michael Love 41k • written 5 weeks ago by saadmurtazakhan ▴ 10

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492

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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228

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ensembldb biomaRt

updated 12 weeks ago by Robin • 0 • written 12 weeks ago by Pez ▴ 10

17 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k