Bioconductor Ensembldb

Showing : ensembldb • reset

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 4 weeks ago by Shiva • 0 • written 5.5 years ago by Guido Hooiveld ★ 3.9k

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4.2k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 21 months ago by Recep ▴ 20

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2.6k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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1.5k

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ensembldb biomaRt

updated 9 months ago by Michael Love 42k • written 9 months ago by Benjamin ▴ 30

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1.4k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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970

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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844

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

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805

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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568

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GO ensembldb

6 months ago Rockbar • 0

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504

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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492

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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316

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ensembldb genomei GenomeInfoDb

12 weeks ago Kai Hu ▴ 70

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272

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ensembldb

updated 12 days ago by James W. MacDonald 65k • written 13 days ago by Fara • 0

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228

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by ramonmassoni ▴ 10

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228

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ensembldb biomaRt

updated 12 weeks ago by Robin • 0 • written 12 weeks ago by Pez ▴ 10

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174

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ensembldb transcriptome genome coordinateconversion

updated 5 weeks ago by Michael Love 42k • written 5 weeks ago by saadmurtazakhan ▴ 10

17 results • Page 1 of 1

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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Popular Question to WouterDeCoster ▴ 130

Scholar to Michael Love 42k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k