Showing : export • reset
2
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1.2k
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BLAST export library 'annotate'
blast annotate biostrings export fasta
7.5 years ago b.stielow • 0
2
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11
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2.7k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 4.3 years ago by ▴ 290 • written 4.3 years ago by ★ 1.5k
2
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4
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2.5k
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exporting limma log2 data
limma export log2 data agilent
updated 7.6 years ago by 59k • written 7.6 years ago by ▴ 110
2
votes
1
reply
893
views
problem with export() in rtracklayer
rtracklayer export
updated 6.8 years ago by 11k • written 6.8 years ago by ★ 27k
0
votes
1
reply
626
views
Error in export ifelse from IRanges
iranges ifelse package namespace export
updated 4.4 years ago by 59k • written 4.4 years ago by • 0
2
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1
reply
652
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 4.2 years ago by 59k • written 4.2 years ago by • 0
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2
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1.0k
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Exporting a GenomicRanges object as GTF/GFF file
genomicranges rtracklayer gtf gff export
4.9 years ago rubi ▴ 100
0
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0
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5.6k
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Tutorial: doParallel foreach already exporting variable(s)
doParallel foreach export Tutorial
5.3 years ago solo7773 ▴ 10
8 results • Page 1 of 1
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Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2 by andrebolerbarros ▴ 10
Hi Michael, I'm using the "contrast" parameter, so I cannot use apeglm with that, as far as I know. The "coef" will not allow me to do eve…
Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k
So the way the p-values are generated (non-parametric) you won't get a ranking among these that are highly significant. You can use logFC. …
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2 by Michael Love 36k
Note sure why it's having difficulty converging. You could use apeglm?
Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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