Bioconductor Expression

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by Paulo Nuin ▴ 200

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1.3k

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variance formula expression

updated 5.3 years ago by mikhael.manurung ▴ 270 • written 5.3 years ago by rina ▴ 30

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3.3k

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rpkm scater calcaverage R expression

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by kushshah ▴ 10

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716

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deseq2 genes expression

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by UserAnonyme • 0

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1.9k

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RATs RNA-Seq Isoforms DTU expression

updated 4.9 years ago by fruce_ki ▴ 20 • written 4.9 years ago by UserAnonyme • 0

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1.1k

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GEO expression GEOquery

updated 4.1 years ago by Robert Castelo ★ 3.3k • written 4.1 years ago by lsbew • 0

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1.9k

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expression R filtering limma

20 months ago • updated 17 months ago mohammedtoufiq91 ▴ 10

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459

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expression variancePartition edgeR

21 months ago Jonathan • 0

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1.2k

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microarray quantile expression R Normalization

updated 2.8 years ago by Konstantinos Yeles ▴ 80 • written 2.9 years ago by mohammedtoufiq91 ▴ 10

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1.6k

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job sequencing methylation expression Job

9.3 years ago Andy Lynch ▴ 120

10 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0

The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180