Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fgsea
•
reset
0
votes
0
replies
151
views
fgsea: ranking genes using log2FC and pvalues derived from spline model
fgsea
GeneSetEnrichment
splines
RNASeq
4 weeks ago
GT
• 0
2
votes
2
replies
923
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
7 months ago
Assa Yeroslaviz
★ 1.5k
4
votes
4
replies
1.3k
views
NAs in fgseaMultilevel
fgsea
updated 8 months ago by
alserg
▴ 280 • written 8 months ago by
Danté
• 0
1
vote
13
replies
1.7k
views
Ranking the GSEA Results
fgsea
log2FC
9 months ago
V_Vibes
• 0
0
votes
0
replies
421
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
10 months ago
Tanvi
• 0
4
votes
5
replies
1.5k
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
11 months ago
Chris
▴ 20
2
votes
2
replies
1.3k
views
fgsea significant result
fgsea
11 months ago
Chris
▴ 20
4
votes
2
replies
1.4k
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
11 months ago
gene_bioconductor
▴ 10
0
votes
0
replies
391
views
Empty table plot using plotGseaTable()
fgsea
11 months ago
Chris
▴ 20
2
votes
4
replies
1.6k
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
written 11 months ago by
Chris
▴ 20
0
votes
8
replies
2.0k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 10 months ago by
alserg
▴ 280 • written 12 months ago by
sropri
• 0
1
vote
5
replies
983
views
fgsea fork
fgsea
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
yimjohns
• 0
0
votes
2
replies
1.5k
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
13 months ago • updated 12 months ago
Gordon
• 0
0
votes
5
replies
1.4k
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 14 months ago by
James W. MacDonald
68k • written 14 months ago by
Gordon
• 0
3
votes
2
replies
685
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
20 months ago
luca.s
▴ 50
0
votes
0
replies
1.1k
views
using fgsea to compare two datasets
GSEA
fgsea
21 months ago
Cen
• 0
0
votes
0
replies
1.8k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
22 months ago
pg45863
▴ 10
7
votes
6
replies
4.1k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 2.3 years ago by
Gordon Smyth
52k • written 2.4 years ago by
nhaus
▴ 70
0
votes
0
replies
613
views
is it possible to limit fgsea to particular tissue type?
fgsea
2.4 years ago
kavator
▴ 30
0
votes
4
replies
1.5k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt
GO
ensembldb
fgsea
2.5 years ago
dario.beraldi
• 0
0
votes
8
replies
3.2k
views
Problem with fgsea
fgsea
updated 10 months ago by
James W. MacDonald
68k • written 3.1 years ago by
Barista
• 0
2
votes
3
replies
5.2k
views
fgsea not downloading due to new r version. Is there a way around this?
r
fgsea
3.2 years ago
amir.khan
• 0
0
votes
1
reply
3.4k
views
Tied Ranks in fgsea
fgsea
updated 3.9 years ago by
Guido Hooiveld
★ 4.1k • written 3.9 years ago by
zli1
• 0
2
votes
3
replies
2.5k
views
Compute fgsea with my own database with R version 4.0.2
R
fgsea
updated 3.9 years ago by
alserg
▴ 280 • written 4.0 years ago by
julie.hardy
• 0
3
votes
3
replies
5.9k
views
Warning with the example of GSEA
fgsea
fgse
4.0 years ago
julie.hardy
• 0
2
votes
2
replies
3.4k
views
fgsea usage question - what gene set to use?
fgsea
4.1 years ago
alexandr.gopanenko
▴ 50
0
votes
2
replies
2.1k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
yueli7
▴ 20
0
votes
3
replies
2.9k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea
DESeq2
updated 4.2 years ago by
ATpoint
★ 4.8k • written 4.2 years ago by
kavator
▴ 30
0
votes
1
reply
1.5k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 4.8 years ago by
alserg
▴ 280 • written 4.8 years ago by
kavator
▴ 30
1
vote
2
replies
2.1k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 4.8 years ago by
alserg
▴ 280 • written 4.8 years ago by
kavator
▴ 30
3
votes
2
replies
1.9k
views
Calculate S/N ratios from apeglm for GSEA
apeglm
fgsea
Signal-To-Noise Ratio
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
coulsonr
▴ 20
8
votes
5
replies
4.6k
views
How to get t-statistic values using edgeR?
r
edger
t-statistic
fgsea
gsea
updated 5.9 years ago by
Gordon Smyth
52k • written 5.9 years ago by
Biologist
▴ 120
0
votes
3
replies
3.9k
views
fgsea p-values are mostly the same upon analysis
fgsea
gsea
sc-rnaseq
6.7 years ago
atakanekiz
▴ 30
1
vote
2
replies
2.2k
views
ReactomePA / Reactome: GSEA error message
reactomepa
reactome
gsea
fgsea
6.8 years ago
martin.busch
• 0
1
vote
5
replies
2.7k
views
FGSEA only runs with <1000 permutations
fgsea
gsea
updated 7.7 years ago by
alserg
▴ 280 • written 7.7 years ago by
shawn.w.foley
• 0
0
votes
8
replies
3.5k
views
Does fgsea order the stats argument?
fgsea
7.8 years ago
rubi
▴ 110
6
votes
15
replies
3.8k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 8.0 years ago by
willem.ligtenberg
▴ 150 • written 8.0 years ago by
alserg
▴ 280
2
votes
1
reply
2.0k
views
Direction aware fgsea test
fgsea
gsea
updated 8.2 years ago by
alserg
▴ 280 • written 8.3 years ago by
rubi
▴ 110
38 results • Page
1 of 1
Recent ...
Replies
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R
by
Charlie
• 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirect
• 0
https://www.www-njmcdirect.run/
Votes
Bioconductor 3.21 is Released!
DiffBind - question on the use of filtered or unfiltered input data
Answer: Enhanced Volcano Error when drawing connectors
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
matthew
• 0
Popular Question
to
Chris
▴ 20
Scholar
to
ATpoint
★ 4.8k
Popular Question
to
aguirre
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
14 minutes ago
United States,
26 minutes ago
Germany,
32 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 920 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6