Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
fgsea
•
reset
2
votes
2
replies
706
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
3 months ago
Assa Yeroslaviz
★ 1.5k
4
votes
4
replies
904
views
NAs in fgseaMultilevel
fgsea
updated 4 months ago by
alserg
▴ 280 • written 4 months ago by
Danté
• 0
1
vote
13
replies
1.2k
views
Ranking the GSEA Results
fgsea
log2FC
5 months ago
V_Vibes
• 0
0
votes
0
replies
303
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
6 months ago
Tanvi
• 0
4
votes
5
replies
1.1k
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
7 months ago
Chris
▴ 20
2
votes
2
replies
926
views
fgsea significant result
fgsea
7 months ago
Chris
▴ 20
4
votes
2
replies
1.1k
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
7 months ago
gene_bioconductor
▴ 10
0
votes
0
replies
314
views
Empty table plot using plotGseaTable()
fgsea
7 months ago
Chris
▴ 20
2
votes
2
replies
785
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
7 months ago
Chris
▴ 20
0
votes
8
replies
1.4k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 6 months ago by
alserg
▴ 280 • written 8 months ago by
sropri
• 0
1
vote
5
replies
751
views
fgsea fork
fgsea
updated 8 months ago by
James W. MacDonald
67k • written 8 months ago by
yimjohns
• 0
0
votes
2
replies
1.0k
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
9 months ago • updated 8 months ago
Gordon
• 0
0
votes
5
replies
1.1k
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 10 months ago by
James W. MacDonald
67k • written 10 months ago by
Gordon
• 0
3
votes
2
replies
600
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
16 months ago
luca.s
▴ 50
0
votes
0
replies
915
views
using fgsea to compare two datasets
GSEA
fgsea
17 months ago
Cen
• 0
0
votes
0
replies
1.5k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
19 months ago
pg45863
▴ 10
7
votes
6
replies
3.1k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler
GSEA
fgsea
updated 24 months ago by
Gordon Smyth
52k • written 2.0 years ago by
nhaus
▴ 70
0
votes
0
replies
546
views
is it possible to limit fgsea to particular tissue type?
fgsea
2.1 years ago
kavator
▴ 30
0
votes
4
replies
1.4k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt
GO
ensembldb
fgsea
2.2 years ago
dario.beraldi
• 0
0
votes
8
replies
2.6k
views
Problem with fgsea
fgsea
updated 6 months ago by
James W. MacDonald
67k • written 2.7 years ago by
Barista
• 0
2
votes
3
replies
4.0k
views
fgsea not downloading due to new r version. Is there a way around this?
r
fgsea
2.9 years ago
amir.khan
• 0
0
votes
1
reply
3.0k
views
Tied Ranks in fgsea
fgsea
updated 3.6 years ago by
Guido Hooiveld
★ 4.1k • written 3.6 years ago by
zli1
• 0
2
votes
3
replies
2.3k
views
Compute fgsea with my own database with R version 4.0.2
R
fgsea
updated 3.6 years ago by
alserg
▴ 280 • written 3.6 years ago by
julie.hardy
• 0
3
votes
3
replies
5.3k
views
Warning with the example of GSEA
fgsea
fgse
3.7 years ago • updated 3.6 years ago
julie.hardy
• 0
2
votes
2
replies
3.0k
views
fgsea usage question - what gene set to use?
fgsea
3.8 years ago
alexandr.gopanenko
▴ 50
0
votes
2
replies
1.9k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.8 years ago by
Kevin Blighe
★ 4.0k • written 3.8 years ago by
yueli7
▴ 20
0
votes
3
replies
2.7k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea
DESeq2
updated 3.8 years ago by
ATpoint
★ 4.6k • written 3.8 years ago by
kavator
▴ 30
0
votes
1
reply
1.3k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 4.5 years ago by
alserg
▴ 280 • written 4.5 years ago by
kavator
▴ 30
1
vote
2
replies
1.8k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 4.5 years ago by
alserg
▴ 280 • written 4.5 years ago by
kavator
▴ 30
3
votes
2
replies
1.8k
views
Calculate S/N ratios from apeglm for GSEA
apeglm
fgsea
Signal-To-Noise Ratio
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
coulsonr
▴ 20
8
votes
5
replies
4.3k
views
How to get t-statistic values using edgeR?
r
edger
t-statistic
fgsea
gsea
updated 5.6 years ago by
Gordon Smyth
52k • written 5.6 years ago by
Biologist
▴ 120
0
votes
3
replies
3.6k
views
fgsea p-values are mostly the same upon analysis
fgsea
gsea
sc-rnaseq
6.4 years ago
atakanekiz
▴ 30
1
vote
2
replies
2.0k
views
ReactomePA / Reactome: GSEA error message
reactomepa
reactome
gsea
fgsea
6.5 years ago
martin.busch
• 0
1
vote
5
replies
2.5k
views
FGSEA only runs with <1000 permutations
fgsea
gsea
updated 7.4 years ago by
alserg
▴ 280 • written 7.4 years ago by
shawn.w.foley
• 0
0
votes
8
replies
3.2k
views
Does fgsea order the stats argument?
fgsea
7.5 years ago
rubi
▴ 110
6
votes
15
replies
3.5k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.7 years ago by
willem.ligtenberg
▴ 150 • written 7.7 years ago by
alserg
▴ 280
2
votes
1
reply
1.8k
views
Direction aware fgsea test
fgsea
gsea
updated 7.9 years ago by
alserg
▴ 280 • written 7.9 years ago by
rubi
▴ 110
37 results • Page
1 of 1
Recent ...
Replies
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Hervé Pagès
16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript
by
mat149
▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
anna.cot.anna.cot
▴ 30
Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards
• All
Popular Question
to
gabriel.hoffman
▴ 170
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
martin.grigorov
▴ 10
Scholar
to
James W. MacDonald
67k
Popular Question
to
Benjamin
▴ 20
Locations
• All
China,
1 hour ago
Macao,
1 hour ago
China,
1 hour ago
The city by the bay,
1 hour ago
Bangladesh,
2 hours ago
Traffic: 691 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6