Showing : fgsea • reset
2
votes
2
replies
654
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
10 weeks ago Assa Yeroslaviz ★ 1.5k
4
votes
4
replies
808
views
NAs in fgseaMultilevel
fgsea
updated 3 months ago by ▴ 280 • written 3 months ago by • 0
1
vote
13
replies
1.1k
views
Ranking the GSEA Results
fgsea log2FC
4 months ago V_Vibes • 0
0
votes
0
replies
282
views
Filtering the genesets for fgseaMultiLevel
msigdb fgsea msig
5 months ago Tanvi • 0
4
votes
5
replies
977
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
6 months ago Chris ▴ 20
2
votes
2
replies
853
views
fgsea significant result
fgsea
6 months ago Chris ▴ 20
4
votes
2
replies
1.1k
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
6 months ago gene_bioconductor ▴ 10
0
votes
0
replies
289
views
Empty table plot using plotGseaTable()
fgsea
6 months ago Chris ▴ 20
2
votes
2
replies
693
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
6 months ago Chris ▴ 20
0
votes
8
replies
1.2k
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
updated 5 months ago by ▴ 280 • written 7 months ago by • 0
1
vote
5
replies
714
views
fgsea fork
fgsea
updated 7 months ago by 67k • written 7 months ago by • 0
0
votes
2
replies
916
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
8 months ago • updated 7 months ago Gordon • 0
0
votes
5
replies
1.0k
views
Help with DESeq results to pathways with the fgsea package
fgsea rna
updated 9 months ago by 67k • written 9 months ago by • 0
3
votes
2
replies
580
views
cant' download fgsea_1.20.0.tar.gz
download fgsea
15 months ago luca.s ▴ 50
0
votes
0
replies
882
views
using fgsea to compare two datasets
GSEA fgsea
16 months ago Cen • 0
0
votes
0
replies
1.4k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
18 months ago pg45863 ▴ 10
7
votes
6
replies
3.0k
views
Implementation of the "original" GSEA algorithm in R
clusterProfiler GSEA fgsea
updated 22 months ago by 51k • written 23 months ago by ▴ 70
0
votes
0
replies
530
views
is it possible to limit fgsea to particular tissue type?
fgsea
2.0 years ago kavator ▴ 30
0
votes
4
replies
1.4k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
2.1 years ago dario.beraldi • 0
0
votes
8
replies
2.5k
views
Problem with fgsea
fgsea
updated 5 months ago by 67k • written 2.6 years ago by • 0
2
votes
3
replies
3.8k
views
fgsea not downloading due to new r version. Is there a way around this?
r fgsea
2.8 years ago amir.khan • 0
0
votes
1
reply
3.0k
views
Tied Ranks in fgsea
fgsea
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
2
votes
3
replies
2.2k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 3.5 years ago by ▴ 280 • written 3.5 years ago by • 0
3
votes
3
replies
5.1k
views
Warning with the example of GSEA
fgsea fgse
3.6 years ago • updated 3.5 years ago julie.hardy • 0
2
votes
2
replies
2.9k
views
fgsea usage question - what gene set to use?
fgsea
3.7 years ago alexandr.gopanenko ▴ 50
0
votes
2
replies
1.9k
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by ▴ 20
0
votes
3
replies
2.6k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.7 years ago by ★ 4.5k • written 3.8 years ago by ▴ 30
0
votes
1
reply
1.3k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 4.4 years ago by ▴ 280 • written 4.4 years ago by ▴ 30
1
vote
2
replies
1.8k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 4.4 years ago by ▴ 280 • written 4.4 years ago by ▴ 30
3
votes
2
replies
1.7k
views
Calculate S/N ratios from apeglm for GSEA
apeglm fgsea Signal-To-Noise Ratio
updated 5.5 years ago by 42k • written 5.5 years ago by ▴ 20
8
votes
5
replies
4.2k
views
How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.5 years ago by 51k • written 5.5 years ago by ▴ 120
0
votes
3
replies
3.5k
views
fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
6.3 years ago atakanekiz ▴ 30
1
vote
2
replies
2.0k
views
ReactomePA / Reactome: GSEA error message
reactomepa reactome gsea fgsea
6.4 years ago martin.busch • 0
1
vote
5
replies
2.4k
views
FGSEA only runs with <1000 permutations
fgsea gsea
updated 7.3 years ago by ▴ 280 • written 7.3 years ago by • 0
0
votes
8
replies
3.2k
views
Does fgsea order the stats argument?
fgsea
7.4 years ago rubi ▴ 110
6
votes
15
replies
3.4k
views
Change in pathway IDs scheme in reactome.db
reactome.db fgsea
updated 7.6 years ago by ▴ 150 • written 7.6 years ago by ▴ 280
2
votes
1
reply
1.8k
views
Direction aware fgsea test
fgsea gsea
updated 7.8 years ago by ▴ 280 • written 7.8 years ago by ▴ 110
37 results • Page 1 of 1
Recent ...
Replies
Comment: preprocessIllumina error with EPICv2 array by Rakesh • 0
Amazing, thanks for the help!
Answer: Allele frequencies for ALL alleles of one SNP ? by Robert Castelo ★ 3.4k
Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…
Answer: preprocessIllumina error with EPICv2 array by James W. MacDonald 67k
You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by Haibo Liu • 0
Thank you for your reminder. I did forget that, but I just bumped the version to 1.1.1.
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by shepherl 4.1k
@haibol2017-23658 make sure you have the valid version bump in the description on our git repository in order for the new version to propa…
Votes
Answer: preprocessIllumina error with EPICv2 array
Answer: preprocessIllumina error with EPICv2 array
Answer: UniProt.ws query loading indefinitely
Answer: Package needs internet access
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Awards • All
Scholar to James W. MacDonald 67k
Popular Question to shepherl 4.1k
Popular Question to Robert Castelo ★ 3.4k
Popular Question to firestar ▴ 20
Popular Question to Ahdee ▴ 50
Locations • All
France, 3 minutes ago
United Kingdom, 7 minutes ago
Germany, 18 minutes ago
United States, 27 minutes ago
Türkiye, 41 minutes ago
Traffic: 655 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6