Showing : flowcytometry • reset
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.1 years ago by • 0
0
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1
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1.3k
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samples are reordered in read.flowSet
flowcore flowcytometry
8.7 years ago Jiang, Mike ★ 1.3k
1
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
1
vote
1
reply
1.5k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.3 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
0
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1
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1.2k
views
FlowViz package question
flowviz flowcytometry
8.2 years ago • updated 8.1 years ago Jiang, Mike ★ 1.3k
1
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1
reply
608
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
2
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1
reply
882
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
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1
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1.8k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.1 years ago Jiang, Mike ★ 1.3k
2
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9
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1.4k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
0
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2
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2.0k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
0
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1
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1.1k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
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2
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1.9k
views
xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
0
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0
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1.2k
views
FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.2 years ago Pieter Coussement ▴ 30
0
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0
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106
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
5 weeks ago taylor.witte • 0
4
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1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
0
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0
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1.3k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.1 years ago Jiang, Mike ★ 1.3k
0
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1
reply
1.4k
views
read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.2 years ago e.bestion • 0
0
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1
reply
1.2k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.2 years ago mo • 0
0
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1
reply
1.1k
views
[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.0 years ago fabrizio.benedetti.82 • 0
0
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0
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546
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
17 months ago Dennis.hinkel • 0
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0
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345
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Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
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0
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685
views
Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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0
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257
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
0
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0
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542
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
0
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0
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446
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
25 results • Page 1 of 1
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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