Showing : genefilter • reset
2
votes
12
replies
2.0k
views
I want to order genes in GO groups
gene ontology genefilter
updated 8.0 years ago by ▴ 360 • written 8.1 years ago by ▴ 10
0
votes
8
replies
1.4k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
votes
9
replies
1.6k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.4 years ago by ★ 7.4k • written 16.4 years ago by ▴ 80
0
votes
5
replies
1.3k
views
genefilter displaying the expression set
genefilter genefilter
14.6 years ago dhaarini s ▴ 70
0
votes
5
replies
1.1k
views
data() function problem
genefilter genefilter
20.4 years ago ZRG Zeren Gao ▴ 30
0
votes
11
replies
1.4k
views
'recursive default argument' error in GOENTREZID2GO
GO Biobase genefilter graph Category GO Biobase genefilter graph Category
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 260
0
votes
10
replies
1.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 16.8 years ago by ▴ 460 • written 16.9 years ago by ▴ 70
0
votes
11
replies
1.5k
views
Nonspecific filtering on Human Gene ST 1.0 Arrays
genefilter genefilter
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 840
0
votes
9
replies
1.4k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 10.3 years ago by 63k • written 10.3 years ago by ★ 12k
0
votes
5
replies
1.4k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ★ 2.2k
0
votes
3
replies
3.1k
views
Installing genefilter
Microarray genefilter multtest Microarray genefilter multtest
updated 18.6 years ago by ▴ 300 • written 18.7 years ago by ▴ 20
0
votes
3
replies
918
views
Recent changes to Bioconductor packages
genefilter affy graph Rgraphviz limma annaffy genefilter affy graph Rgraphviz limma
20.1 years ago • updated 20.0 years ago madman@jimmy.harvard.edu ▴ 850
7
votes
5
replies
1.7k
views
Adjusted P values
limma genefilter
updated 8.9 years ago by 48k • written 8.9 years ago by ▴ 10
0
votes
6
replies
1.7k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.3 years ago by ★ 2.0k • written 12.3 years ago by ▴ 110
0
votes
4
replies
1.1k
views
Using genefilter
genefilter affy limma genefilter affy limma
15.3 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
0
votes
5
replies
1.7k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.2 years ago by 63k • written 16.2 years ago by ▴ 50
0
votes
5
replies
1.4k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 20.5 years ago by ★ 3.9k • written 20.5 years ago by ▴ 70
4
votes
4
replies
1.9k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 7.8 years ago by 13k • written 7.8 years ago by ▴ 10
0
votes
11
replies
2.4k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 2.2k
0
votes
6
replies
1.7k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.4 years ago by ▴ 20 • written 16.4 years ago by ▴ 200
0
votes
4
replies
1.1k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 16.9 years ago by 25k • written 16.9 years ago by ★ 2.2k
0
votes
2
replies
2.2k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 10.5 years ago by 25k • written 10.5 years ago by ▴ 30
1
vote
2
replies
1.2k
views
removal of probes called "Absent"
probe genefilter probe genefilter
updated 13.2 years ago by ▴ 930 • written 13.2 years ago by ▴ 100
9
votes
10
replies
1.8k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.3 years ago Jurat Shahidin ▴ 80
0
votes
4
replies
963
views
Does factDesign deal with two-color data?
Microarray genefilter affy factDesign Microarray genefilter affy factDesign
updated 14.3 years ago by ▴ 70 • written 14.3 years ago by ▴ 240
0
votes
2
replies
2.7k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 360
0
votes
3
replies
728
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
18.5 years ago Francois Pepin ★ 1.3k
0
votes
4
replies
1.5k
views
how to unlock a package environment
Annotation Arabidopsis thaliana ath1121501 genefilter Annotation Arabidopsis thaliana
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 170
0
votes
12
replies
1.7k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 16.9 years ago by ★ 5.5k • written 16.9 years ago by ▴ 460
1
vote
3
replies
8.6k
views
genefilter installation error
genefilter genefilter
updated 9.1 years ago by ▴ 150 • written 9.1 years ago by ▴ 10
0
votes
8
replies
1.9k
views
genefiltering before or after the normalization?
Normalization genefilter Normalization genefilter
updated 15.2 years ago by ★ 2.0k • written 15.2 years ago by ▴ 340
0
votes
2
replies
1.1k
views
Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 20
0
votes
2
replies
1.4k
views
Can't load annotations with lumi
Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn
updated 14.9 years ago by ★ 1.2k • written 14.9 years ago by ▴ 280
0
votes
2
replies
871
views
newbie Q about object identity
GUI Biobase genefilter GUI Biobase genefilter
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 20
0
votes
2
replies
910
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 10
0
votes
8
replies
2.9k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 100
0
votes
2
replies
1.4k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
16.7 years ago Mark W Kimpel ▴ 830
0
votes
2
replies
1.1k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.3 years ago Kimpel, Mark W ▴ 890
0
votes
5
replies
856
views
Failing to install genefilter-1.12.0
genefilter genefilter
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 4.3k
0
votes
3
replies
1.3k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 17.5 years ago by ▴ 70 • written 17.5 years ago by ★ 2.2k
0
votes
6
replies
3.1k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.1 years ago by ▴ 220 • written 16.1 years ago by ★ 2.2k
0
votes
2
replies
1.0k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.0 years ago by ▴ 40 • written 16.0 years ago by ▴ 110
0
votes
2
replies
1.2k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 130
0
votes
3
replies
1.0k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ★ 1.7k
0
votes
2
replies
914
views
justRMA using incorrect default cdf
GO Survival rat2302 cdf annotate genefilter affy limma affycoretools GO Survival cdf
17.7 years ago Kimpel, Mark W ▴ 890
0
votes
2
replies
779
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 10
0
votes
2
replies
936
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.2 years ago by ★ 5.5k • written 19.2 years ago by ▴ 320
0
votes
3
replies
1.1k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 80
0
votes
2
replies
1.1k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 16.7 years ago by ▴ 160 • written 16.7 years ago by ▴ 50
0
votes
2
replies
1.3k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.2 years ago Jenny Drnevich ★ 2.2k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k
Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…
Comment: Exporting DESeq2 filtered results by camillab. ▴ 10
thanks! I didn't`t notice that. I will cancel it now!
Votes
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
A: BiomaRt Arabidopsis genome unavailable
Answer: enrichKEGG
A: Effect of lfcThreshold on p-value in DESeq2
Comment: Mixed up sample info with plotPCA
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Popular Question to James W. MacDonald 63k
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