Showing : genefilter • reset
1
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3
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608
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DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but recovers many important genes
metaanalysis meanSd genefilter DESeq2
10 months ago Ndimensional ▴ 20
1
vote
3
replies
2.9k
views
DESeq2/genefilter compatibility with R 4.2.2
DESeq2 genefilter
18 months ago • updated 17 months ago Morgane ▴ 10
1
vote
1
reply
667
views
Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 21 months ago by 65k • written 21 months ago by ▴ 40
0
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0
replies
687
views
Cannot Install genefilter
genefilter
21 months ago Francis • 0
0
votes
1
reply
686
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
10
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23
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13k
views
Macbook M1 install genefilter failed
DESeq2 m1 macbook genefilter
2.7 years ago • updated 17 months ago soda ▴ 80
0
votes
2
replies
1.2k
views
genefilter not available for R v4.1/arm64
DESeq2 genefilter
2.8 years ago jeremymsimon ▴ 20
0
votes
1
reply
699
views
Error using simpleaffy
software error simpleaffy genefilter
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
9
votes
10
replies
2.1k
views
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
limma microarray genefilter deseq2
4.9 years ago Jurat Shahidin ▴ 80
0
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6
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1.9k
views
Save ExpressionSet to csv file with columns and rows headers
microarray genefilter
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
1
reply
1.4k
views
genefilter Package not available for R 3.5.2
genefilter
5.3 years ago radhikasundar520 • 0
0
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1
reply
2.1k
views
Can not install packages
ballgown genefilter RskittleBrewer
updated 5.5 years ago by ★ 6.5k • written 5.5 years ago by • 0
0
votes
5
replies
1.8k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor brainarray genefilter oligo
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
0
votes
1
reply
1.5k
views
Unable to compile genefilter package
bioconductor genefilter compile
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
1
vote
4
replies
1.9k
views
cran check shows that genefilter is not available
genefilter
6.4 years ago jinkaixiu ▴ 10
0
votes
1
reply
1.8k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2 filter genefilter
updated 6.4 years ago by 41k • written 6.5 years ago by • 0
1
vote
3
replies
1.5k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
6.6 years ago lirongrossmann ▴ 80
0
votes
3
replies
1.8k
views
error in filtering genes with rowVars(gexpr(bg_chrX)) >1
genefilter ballgown
updated 6.3 years ago by • 0 • written 6.7 years ago by • 0
1
vote
5
replies
1.1k
views
error when trying to apply the specific gene filter.
genefilter
6.8 years ago • updated 6.7 years ago DataFanatic ▴ 10
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
1
vote
4
replies
1.4k
views
Error in the package of "genefilter" "nsFilter"
genefilter
updated 7.5 years ago by 65k • written 7.5 years ago by ▴ 20
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
4
votes
1
reply
1.1k
views
Is it valid to use only genes of interest before eBayes step in limma?
limma genefilter
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
1
vote
1
reply
1.5k
views
Error using nsFilter() Error in (function (classes, fdef, mtable) unable to find an inherited method for function columns for signature function
genefilter
8.0 years ago Lucy • 0
6
votes
6
replies
1.8k
views
genefilter filtered out 60% of the original genes?
genefilter edgeR
updated 8.0 years ago by ▴ 180 • written 8.0 years ago by ▴ 20
2
votes
1
reply
1.5k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 8.0 years ago by 50k • written 8.0 years ago by • 0
0
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1
reply
953
views
Really weird results when I filter this new data that I have, script has worked on two previous data sets.
microarray limma genefilter
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
0
votes
1
reply
1.2k
views
nsFilter not filtering out all of the normgene->exon.
genefilter affymetrix microarrays
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
2
votes
2
replies
1.3k
views
I'm looking for a filtering method that it does't use genewise variances
genefilter liimma microarray
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 20
4
votes
4
replies
2.1k
views
Suggestions for non-specific filtering criteria with limma
limma genefilter
updated 8.3 years ago by ★ 13k • written 8.4 years ago by ▴ 10
4
votes
4
replies
2.6k
views
DEXSeq and Independent filtering
dexseq deseq2 genefilter
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 20
2
votes
12
replies
2.4k
views
I want to order genes in GO groups
gene ontology genefilter
updated 8.6 years ago by ▴ 360 • written 8.6 years ago by ▴ 10
0
votes
2
replies
2.9k
views
Error with oligo: environmentIsLocked
oligo bioconductor genefilter
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 10
2
votes
7
replies
1.6k
views
why genefilter does not work for me ?
R microarray genefilter
9.2 years ago Nemo ▴ 80
4
votes
4
replies
2.6k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter R bioconductor differential gene expression
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 830
7
votes
5
replies
2.0k
views
Adjusted P values
limma genefilter
updated 9.5 years ago by 50k • written 9.5 years ago by ▴ 10
2
votes
4
replies
1.7k
views
filter.log in nsFilter function (package genefilter) gives null value
genefilter
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 10
1
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3
replies
9.0k
views
genefilter installation error
genefilter genefilter
updated 9.7 years ago by ▴ 150 • written 9.7 years ago by ▴ 10
0
votes
1
reply
1.1k
views
selection of probes, probesets mapping to the same gene
genefilter genefilter
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 680
0
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2
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1.4k
views
Fwd: adjusted P-values
Cancer genefilter Cancer genefilter
updated 10.0 years ago by ★ 4.2k • written 10.0 years ago by ▴ 190
0
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0
replies
905
views
adjusted P-values
genefilter genefilter
10.0 years ago Guest User ★ 13k
0
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1
reply
3.9k
views
error in installing \"genefilter\"
genefilter genefilter
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 13k
1
vote
1
reply
2.0k
views
Rosetta Resolver-like error-weighted ANOVAs in Bioconductor
Microarray genefilter affy Microarray genefilter affy
updated 10.2 years ago by ★ 7.9k • written 10.2 years ago by ▴ 10
0
votes
4
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1.9k
views
genefilter kOverA filter by range
genefilter genefilter
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 220
0
votes
1
reply
1.1k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 10.5 years ago by 65k • written 10.5 years ago by 16k
0
votes
3
replies
2.0k
views
Problem installing genefilter (Ubuntu 12.04; Bioconductor v2.12)
genefilter genefilter
updated 10.7 years ago by 65k • written 10.7 years ago by ★ 13k
0
votes
9
replies
1.6k
views
Error in calculating P-values with Genefilter function
genefilter genefilter
updated 10.9 years ago by 65k • written 10.9 years ago by ★ 13k
0
votes
2
replies
2.4k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 30
0
votes
0
replies
950
views
analysis of HuGene2.0-st array affymetrix -aroma package
genefilter genefilter
11.1 years ago Andreia Fonseca ▴ 810
0
votes
1
reply
1.1k
views
Help with installing genefilter -- "installed directory not writable"
Microarray genefilter Microarray genefilter
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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