Bioconductor Genes

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488

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DESeq2 genes Differential expressed

11 months ago Syed Zaheer ▴ 10

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864

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GeneSetEnrichment genes genetogo

updated 22 months ago by Basti ▴ 780 • written 22 months ago by Noy • 0

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604

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R microRNA genes binding Site

4.8 years ago pengu447 • 0

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1.3k

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edger differential expression genes fold change

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by ilovesuperheroes1993 • 0

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694

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deseq2 genes expression

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by UserAnonyme • 0

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1.1k

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topGO significant enrichment genes IDs

5.3 years ago David ROUX ▴ 20

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907

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deseq2 variance genes

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by hs.lansdell ▴ 20

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1.1k

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cnv genes genomic ranges splitByOverlap

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by julrodr80 ▴ 30

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699

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deseq2 genes

updated 7.7 years ago by Michael Love 41k • written 7.7 years ago by silviajserrano • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 41k • written 7.9 years ago by aziza ▴ 20

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2.4k

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heatmap rownames genes

8.6 years ago johnlee.johnson • 0

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1.2k

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datasets genes gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0