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Showing :
genes
•
reset
0
votes
2
replies
301
views
Deseq2 design
DESeq2
genes
Differential
expressed
4 months ago
Syed Zaheer
▴ 10
0
votes
1
reply
494
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 15 months ago by
Basti
▴ 720 • written 15 months ago by
Noy
• 0
0
votes
1
reply
488
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
4.2 years ago
pengu447
• 0
2
votes
4
replies
933
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.3 years ago by
Aaron Lun
★ 28k • written 4.3 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
549
views
Two factors design with DESEq2
deseq2
genes
expression
updated 4.5 years ago by
Michael Love
40k • written 4.5 years ago by
UserAnonyme
• 0
1
vote
1
reply
896
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
4.7 years ago
David ROUX
▴ 20
0
votes
1
reply
725
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 5.9 years ago by
Michael Love
40k • written 5.9 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
946
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
julrodr80
▴ 30
0
votes
1
reply
617
views
No differentyally expresses genes
deseq2
genes
updated 7.2 years ago by
Michael Love
40k • written 7.2 years ago by
silviajserrano
• 0
0
votes
3
replies
2.4k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 7.3 years ago by
Michael Love
40k • written 7.3 years ago by
aziza
▴ 20
0
votes
1
reply
2.1k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
8.0 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.0k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 8.1 years ago by
Steve Lianoglou
13k • written 8.1 years ago by
vavecilla
• 0
12 results • Page
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Answer: Is SeqSQC compatible with hg38?
by
James W. MacDonald
63k
I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…
Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of
by
Gregory
• 0
Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …
Comment: DiffBind handling of replicates and consensus
by
Rory Stark
★ 5.0k
You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…
Comment: DiffBind: dba.plotProfile(profiles)
by
Rory Stark
★ 5.0k
Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…
Comment: DiffBind: dba.plotProfile(profiles)
by
Dorien
▴ 10
Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …
Votes
Answer: How do I merge a list of GRanges?
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar
Comment: DiffBind: dba.plotProfile(profiles)
Answer: DiffBind - how to prep the sample matrix when multiple bam files are used by MAC
Comment: DiffBind: dba.plotProfile(profiles)
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