Showing : genetics • reset
0
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5
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1.3k
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downloading different kinds of microarray data
Sequencing Microarray Genetics Annotation gpls convert GEOquery GEOmetadb Sequencing gpls
updated 11.8 years ago by ▴ 30 • written 11.8 years ago by 21k
0
votes
3
replies
791
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GO analysis
Genetics Annotation GO Genetics Annotation GO
updated 18.4 years ago by ★ 1.1k • written 18.5 years ago by ▴ 100
0
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3
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766
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gene2pathway retrain: which model is more complete?
Genetics Coverage biomaRt gene2pathway Genetics Coverage biomaRt gene2pathway
11.8 years ago Bogdan ▴ 50
0
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5
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1.7k
views
mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 10.8 years ago by ▴ 20 • written 10.8 years ago by ▴ 350
0
votes
3
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898
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package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 18.2 years ago by ★ 3.9k • written 18.2 years ago by ▴ 20
0
votes
3
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610
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Limma question
Genetics limma Genetics limma
updated 16.3 years ago by ★ 6.0k • written 16.3 years ago by ▴ 310
0
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7
replies
1.0k
views
Seeking assistance on ROC
Genetics ROC Genetics ROC
12.3 years ago Susan Bosco ▴ 80
0
votes
8
replies
1.9k
views
Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 7.9 years ago by ▴ 750 • written 7.9 years ago by ▴ 140
0
votes
3
replies
730
views
RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
9.7 years ago Julie Zhu ★ 4.3k
0
votes
3
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909
views
R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 16.9 years ago by ▴ 360 • written 16.9 years ago by ★ 2.9k
0
votes
2
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840
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RE: Display scale on hclust heatmap (Warnes, Gregory R )
Genetics Genetics
18.5 years ago Warnes, Gregory R ▴ 460
0
votes
2
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695
views
just.gcrma and normalisation
Genetics affy gcrma Genetics affy gcrma
updated 15.9 years ago by ▴ 200 • written 15.9 years ago by ▴ 310
0
votes
2
replies
753
views
AnnBuilder subscript out of bounds error
Microarray Genetics Annotation GO probe AnnBuilder PROcess Microarray Genetics Annotation
updated 16.2 years ago by ▴ 780 • written 16.2 years ago by ▴ 20
0
votes
2
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586
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Partial F-test using LIMMA
Genetics limma Genetics limma
updated 17.2 years ago by ▴ 110 • written 17.2 years ago by ▴ 20
0
votes
2
replies
759
views
multtest library load problem
Genetics Cancer Genetics Cancer
updated 20.0 years ago by ▴ 280 • written 20.0 years ago by ▴ 10
0
votes
2
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1.0k
views
strange layering in PCA after removeBatchEffect()
Genetics limma Genetics limma
updated 8.5 years ago by ▴ 10 • written 8.5 years ago by ▴ 90
0
votes
2
replies
1.1k
views
a workflow of population genomic operations/analysis using bioconductor
Genetics genomes Genetics genomes
updated 11.5 years ago by 11k • written 11.5 years ago by ▴ 290
0
votes
4
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1.0k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 10.2 years ago by ▴ 20 • written 10.2 years ago by ▴ 30
0
votes
2
replies
838
views
Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Genetics Genetics
updated 8.3 years ago by 45k • written 8.3 years ago by ▴ 10
0
votes
2
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974
views
DESeq variance stabilisation and clustering
Genetics Clustering PROcess DESeq Genetics Clustering PROcess DESeq
updated 11.2 years ago by ▴ 30 • written 11.2 years ago by ▴ 20
0
votes
2
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526
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DESeq estimateDispersion options for lower depth
Genetics GO Genetics GO
10.2 years ago Aggarwal, Praful ▴ 50
2
votes
7
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3.8k
views
Extend GRanges start/end
Genetics GenomicFeatures Genetics GenomicFeatures
updated 9.6 years ago by 11k • written 9.6 years ago by ▴ 480
0
votes
2
replies
491
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problem with qPCR raw data
Genetics Genetics
updated 12.3 years ago by ★ 2.0k • written 12.3 years ago by ▴ 60
3
votes
5
replies
1.3k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 20
0
votes
2
replies
539
views
Help to understand logistic model used in MEDME
Genetics MEDME Genetics MEDME
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ▴ 80
0
votes
3
replies
2.2k
views
Outlier detection in DEseq
Genetics DESeq Genetics DESeq
updated 11.6 years ago by ★ 3.7k • written 11.6 years ago by ▴ 20
0
votes
3
replies
813
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 15.1 years ago by ▴ 870 • written 15.1 years ago by 59k
1
vote
3
replies
2.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 16.1 years ago by ★ 1.9k • written 16.1 years ago by 45k
0
votes
2
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610
views
Could limma be as good as GeneSpring in nomalization?
Genetics limma Genetics limma
updated 17.5 years ago by ★ 1.8k • written 17.5 years ago by ▴ 90
0
votes
2
replies
658
views
DESeq - non-differential expression
Sequencing miRNA Genetics DESeq Sequencing miRNA Genetics DESeq
updated 11.1 years ago by ▴ 180 • written 11.1 years ago by ▴ 10
0
votes
2
replies
768
views
limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
16.5 years ago Gordon Smyth 45k
0
votes
2
replies
1.9k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ▴ 110
0
votes
2
replies
532
views
Custom CDFs from U mich for GeneChip Analysis
Genetics Cancer Genetics Cancer
updated 15.6 years ago by 59k • written 15.6 years ago by ▴ 50
0
votes
7
replies
958
views
Plate or print-order effects - limma
Genetics limma Genetics limma
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by 45k
0
votes
4
replies
1.1k
views
allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 60
0
votes
3
replies
936
views
Clustering and gene modules
Genetics Clustering Cancer goCluster Genetics Clustering Cancer goCluster
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 40
0
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4
replies
12k
views
Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 4.2 years ago by • 0 • written 11.6 years ago by ▴ 20
1
vote
12
replies
2.5k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 6.3 years ago by ▴ 10 • written 8.0 years ago by ▴ 140
0
votes
1
reply
691
views
Problems with hgu133acdf...!
Genetics cdf probe affy Genetics cdf probe affy
updated 18.7 years ago by 59k • written 18.7 years ago by ▴ 30
0
votes
1
reply
989
views
Re: Single channel normalization
Genetics Normalization GO limma Genetics Normalization GO limma
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 30
0
votes
1
reply
560
views
Build an Annotation with GO2ALLPROBES
Genetics Annotation AnnBuilder GOstats Genetics Annotation AnnBuilder GOstats
updated 16.2 years ago by ▴ 780 • written 16.2 years ago by ▴ 20
0
votes
3
replies
922
views
Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off topic)
Genetics Annotation Genetics Annotation
updated 13.8 years ago by ▴ 910 • written 13.8 years ago by ▴ 90
0
votes
1
reply
553
views
Bug in Biobase 1.3.22
Genetics Genetics
updated 19.0 years ago by ★ 3.9k • written 19.0 years ago by ▴ 10
0
votes
1
reply
867
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 15.7 years ago by ▴ 360 • written 15.7 years ago by ▴ 10
0
votes
1
reply
709
views
ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 19.1 years ago by ★ 2.3k • written 19.1 years ago by ▴ 30
0
votes
1
reply
1.6k
views
estimateDispersions in DESeq
Genetics graph DESeq Genetics graph DESeq
updated 9.9 years ago by 13k • written 9.9 years ago by ▴ 10
0
votes
1
reply
627
views
getBioC problem: reposTools
Genetics reposTools Genetics reposTools
updated 19.2 years ago by ★ 3.9k • written 19.2 years ago by ▴ 1000
0
votes
1
reply
578
views
Help to analyse a complex experiment
Genetics Normalization vsn limma Genetics Normalization vsn limma
updated 16.3 years ago by ★ 6.0k • written 16.3 years ago by ▴ 770
0
votes
1
reply
809
views
Problem with ljava when I run update.packages2
Genetics RMAGEML Genetics RMAGEML
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 770
0
votes
3
replies
916
views
[TimeCourse Package] Warnings message
Genetics TimeCourse timecourse Genetics TimeCourse timecourse
updated 16.4 years ago by ▴ 440 • written 16.4 years ago by ▴ 770
50 results • Page 1 of 1
Recent ...
Replies
Comment: regression analysis for epic array methylation data using limma by nabiyogesh ▴ 10
Dear Basti, thank you so much! Could you please also help me how to arrange samples in the same order in rows (targests2) and columns in (…
Comment: How to figure out the FC value from Limma by ATpoint ★ 1.2k
You probably have opened that file in Excel before. Get it again directly from GEO2R, or even better take the R script GEO2R offers and run…
Comment: regression analysis for epic array methylation data using limma by Basti ▴ 280
The columns of your design matrix `var` corresponds to the coefficients that are fitted by limma. If you check your design matrix, you will…
Answer: How to figure out the FC value from Limma by beslinail • 0
I tried to FC column to dbl from chr. But FC colomn is changed by NA genlist_filter <- read_csv(file = "AD_control5.csv") genlist_fil…
Comment: WGCNA: correlations module-traits, and module membership-gene significance by annamariabugaj ▴ 10
Hello, sorry for my late response. this is the heatmap: https://drive.google.com/file/d/165fizcsWcA2uzRPVV2cKNPOcqM1d2WfG/view?usp=sharing…
Votes
A: Very low EdgeR Pvalues with very small sample size
A: Very low EdgeR Pvalues with very small sample size
Comment: Question on RNA-Seq single sample data analysis in EdgeR
Answer: Question on RNA-Seq single sample data analysis in EdgeR
Answer: Question on RNA-Seq single sample data analysis in EdgeR
Awards • All
Centurion to Basti ▴ 280
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Scholar to James W. MacDonald 59k
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