Showing : gotools • reset
2
votes
5
replies
158
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 1 day ago by 65k • written 3 days ago by • 0
0
votes
9
replies
1.8k
views
ontoCompare (goTools) : goidvect error
GO goTools GO goTools
12.7 years ago Oana VIGY ▴ 80
0
votes
2
replies
1.1k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
1
reply
1.3k
views
GOtools: argument is of length zero
goTools goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
1
reply
890
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 300
0
votes
0
replies
880
views
GO Tools
goTools goTools
19.0 years ago Mayte Suarez-Farinas ▴ 300
0
votes
2
replies
1.0k
views
GO Tools
GO goTools GO goTools
19.0 years ago Paquet, Agnes ▴ 500
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 17.7 years ago by ▴ 870 • written 17.7 years ago by ▴ 340
0
votes
1
reply
1.0k
views
goTools problem
goTools oligo goTools oligo
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 30
0
votes
1
reply
859
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 100
0
votes
1
reply
864
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 40
0
votes
0
replies
917
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
17.2 years ago Paquet, Agnes ▴ 500
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.0 years ago Paquet, Agnes ▴ 500
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 80
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
1
reply
887
views
Reporting results of HyperGTest
GO goTools GO goTools
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 320
0
votes
0
replies
777
views
goTools package - extract genes
GO probe goTools GO probe goTools
15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by ▴ 830
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
0
votes
1
reply
1.1k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
0
votes
1
reply
1.2k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 14.8 years ago by ▴ 270 • written 14.8 years ago by ▴ 300
0
votes
0
replies
741
views
question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
14.8 years ago Oana VIGY ▴ 80
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
0
votes
0
replies
966
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
14.3 years ago Md.Mamunur Rashid ▴ 260
0
votes
0
replies
851
views
goTools question
probe goTools probe goTools
13.6 years ago Pete Shepard ▴ 240
0
votes
2
replies
1.9k
views
help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 13.6 years ago by ▴ 550 • written 13.6 years ago by ▴ 100
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
votes
2
replies
1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 11.8 years ago by 65k • written 11.8 years ago by ★ 13k
0
votes
0
replies
753
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
0
votes
1
reply
1.0k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
16.6 years ago • updated 16.5 years ago Naomi Altman ★ 6.0k
31 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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