Showing : gui • reset
1
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2
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3.3k
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edgeR: error in readDGE
GUI edgeR GUI edgeR
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 10
0
votes
0
replies
999
views
limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
17.9 years ago Gordon Smyth 50k
0
votes
0
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742
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Top 50 Candidate genes: "wrong" pValues and B results!
Microarray GUI Cancer limma Microarray GUI Cancer limma
19.8 years ago James W. MacDonald 65k
0
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0
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775
views
duplicate correlation of 4 "within array replicates" limma gui
GUI limma microRNA GUI limma microRNA
15.6 years ago Christine Voellenkle ▴ 90
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0
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1.1k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.6 years ago Neel Aluru ▴ 460
0
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0
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1.2k
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EBImage installs but won't load on Mac OS 10.6.4
GO GUI PROcess convert EBImage GO GUI PROcess convert EBImage
13.4 years ago W. A. Green ▴ 40
0
votes
2
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982
views
Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI GUI
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 20
0
votes
3
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1.9k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 11.5 years ago by 21k • written 11.5 years ago by ★ 2.0k
0
votes
1
reply
1.1k
views
Error in isVersioned(object)
GUI GUI
updated 10.1 years ago by 25k • written 10.1 years ago by ★ 13k
0
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3
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3.6k
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Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by ▴ 80
0
votes
1
reply
1.1k
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tkctk widgets
GUI annotate affy GUI annotate affy
updated 22.1 years ago by ★ 2.9k • written 22.2 years ago by ★ 5.5k
0
votes
6
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1.6k
views
Re: fileBrowser
GUI cdf GUI cdf
updated 22.1 years ago by ▴ 530 • written 22.1 years ago by ★ 2.9k
0
votes
0
replies
1.2k
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Reminder: Release 1.2 on May 28th
Microarray SAGE Normalization GO GUI vsn graph AnnBuilder Microarray SAGE Normalization
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
2
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906
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affy still not working
GUI affy GUI affy
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 20
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0
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1.1k
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iFlow error messages
GUI iFlow GUI iFlow
12.2 years ago Gabriel Nathan Kaufman, Mr ▴ 60
0
votes
0
replies
698
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Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI widgetTools GUI widgetTools
21.1 years ago Dr Mushtaq Ahmed ▴ 20
0
votes
0
replies
1.2k
views
Bioconductor 1.2 Released
Microarray SAGE Normalization GO GUI Cancer cdf affy vsn graph AnnBuilder Microarray
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
0
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835
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Analysis Interface Projects [was Seeking collaboration for an opensource data analysisinterface project]
Microarray GUI affy limma Microarray GUI affy limma
20.7 years ago Gordon Smyth 50k
0
votes
0
replies
597
views
Re: Invalid "phenoData" object
GUI limma GUI limma
20.6 years ago Chris Bye ▴ 30
0
votes
2
replies
1.3k
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An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
updated 19 months ago by • 0 • written 20.2 years ago by ▴ 30
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votes
0
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729
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multtest problem
GUI multtest GUI multtest
20.5 years ago Josephine.Liang@uchsc.edu ▴ 60
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0
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792
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BioConductor beginner needing to annotate clones
Microarray GUI annotate Microarray GUI annotate
20.4 years ago Law, Annie ▴ 70
0
votes
0
replies
1.1k
views
Re: Annotate clones Bioconductor beginner
Microarray Annotation GUI annotate widgetTools AnnBuilder Microarray Annotation GUI
20.4 years ago John Zhang ★ 2.9k
0
votes
0
replies
833
views
[BioCBUG] Second user group meeting, 12 Dec 2003 1pm
Microarray GUI Microarray GUI
20.4 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
votes
3
replies
1.4k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI GUI
written 20.2 years ago by ▴ 50
0
votes
1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.2 years ago by ▴ 810
0
votes
7
replies
1.8k
views
recipe for installing and using Bioconductor with Mac OS X 10.3 and R GUI 1.9
GUI GUI
20.1 years ago Marc Salit ▴ 80
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 50
0
votes
1
reply
664
views
Top 50 Candidate genes: "wrong" pValues and B results!
GUI limma GUI limma
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 30
0
votes
0
replies
1.1k
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BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
17.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
818
views
Questions about input data with limma GUI
Microarray GUI limma Microarray GUI limma
19.8 years ago hélène régé ▴ 10
0
votes
1
reply
700
views
Problem with limma gui and sma
GUI limma GUI limma
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 30
0
votes
3
replies
1.4k
views
Installing Packages from Bioconductor: Error
GUI GUI
updated 19.4 years ago by ▴ 270 • written 19.4 years ago by ▴ 20
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
0
votes
2
replies
1.3k
views
Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions
GUI trigger GUI trigger
updated 19.2 years ago by 65k • written 19.2 years ago by ▴ 50
0
votes
1
reply
1.1k
views
FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster
GUI trigger GUI trigger
updated 19.2 years ago by ▴ 430 • written 19.2 years ago by ▴ 50
0
votes
1
reply
713
views
Installing R
GO GUI PROcess GO GUI PROcess
updated 19.2 years ago by ▴ 430 • written 19.2 years ago by ▴ 10
0
votes
7
replies
1.3k
views
bioconductor and ESS
GUI GUI
updated 19.2 years ago by ▴ 360 • written 19.2 years ago by ▴ 30
0
votes
1
reply
1.1k
views
FYI from apple employee RE: [R] Memory error in Mac OS X
GUI trigger GUI trigger
updated 19.1 years ago by ▴ 430 • written 19.1 years ago by ▴ 10
0
votes
0
replies
944
views
affycomp: info.txt is Ok, new error message
GUI affycomp GUI affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
0
votes
0
replies
917
views
installing Bioconductor on Mac OS tiger
GUI GUI
18.8 years ago Kay Schneitz ▴ 10
0
votes
3
replies
1.1k
views
attributes of SAM files
GUI siggenes GUI siggenes
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 100
0
votes
3
replies
1.2k
views
Database for Microarray Data - request for user stories
Microarray Annotation GUI probe Microarray Annotation GUI probe
updated 18.4 years ago by ▴ 50 • written 18.4 years ago by ▴ 320
0
votes
0
replies
582
views
Database for Microarray Data - request for user stories
Microarray Annotation GUI Cancer probe Microarray Annotation GUI Cancer probe
18.4 years ago James W. MacDonald 65k
0
votes
0
replies
1.5k
views
New Quantian releases with almost all of CRAN / BioC
Coverage Visualization GUI Coverage Visualization GUI
18.2 years ago Dirk Eddelbuettel ▴ 80
0
votes
0
replies
916
views
LimmaGUI for illumina data
GUI limma affylmGUI limmaGUI GUI limma affylmGUI limmaGUI
18.0 years ago Roy Williams ▴ 10
0
votes
0
replies
990
views
LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
17.9 years ago Mark Dunning ▴ 320
0
votes
5
replies
1.5k
views
Errors using biocLite on Apple OS X
GUI Cancer Breast Biobase GUI Cancer Breast Biobase
17.8 years ago Steven McKinney ▴ 310
0
votes
1
reply
1.1k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
18.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea() by James W. MacDonald 65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea() by James W. MacDonald 65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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