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idat
•
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0
votes
10
replies
2.2k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
9.2 years ago
lacion
• 0
4
votes
10
replies
2.2k
views
Zero values for bead backgrounds (reading idat files using Illuminaio)
illuminaio
idat
beadarray
updated 8.7 years ago by
Mike Smith
★ 6.5k • written 8.7 years ago by
willj
▴ 30
2
votes
4
replies
1.6k
views
read.idat function misleading error when reading compressed files
idat
illumina
limma
read.idat
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
bastien_chassagnol
• 0
11
votes
5
replies
2.3k
views
Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "detection_pval" given by GenomeStudio?
lumidat
idat
microarray
illumina
updated 8.6 years ago by
Mark Cowley
▴ 400 • written 8.7 years ago by
willj
▴ 30
0
votes
3
replies
2.0k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 7.2 years ago by
xue.zhang
• 0 • written 7.2 years ago by
Frocha
▴ 20
0
votes
2
replies
1.8k
views
Creating Intensity GDS file for the R package GWAStools
gwastools
idat
gds format
updated 6.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 6.8 years ago by
catbriggsm
• 0
0
votes
8
replies
5.2k
views
Error using read.metharray.exp in minfi to read idat files
minfi
read.metharray.exp
idat
HM450k
6.5 years ago
poojitha.stemcell
▴ 10
3
votes
9
replies
5.7k
views
Illumina Expression analysis from iDAT files
beadarray
lumi
illuminaio
idat
updated 2.4 years ago by
Gordon Smyth
50k • written 10.5 years ago by
Sean Davis
21k
0
votes
2
replies
2.0k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.8k
views
bug limma / illuminaio? Otherwise small feature request...
limma
illuminaio
idat
gzip
updated 7.0 years ago by
Matthew Ritchie
▴ 1000 • written 7.0 years ago by
Guido Hooiveld
★ 3.9k
4
votes
8
replies
10k
views
how to use idat file for analyses in bioconductor
microarray
illumina
idat
updated 8.2 years ago by
Gordon Smyth
50k • written 8.2 years ago by
kritikamish99
▴ 10
1
vote
2
replies
3.6k
views
minfi error in read.metharray
minfi
methylation
idat
samplesheet
updated 3.1 years ago by
sci_djw
• 0 • written 5.0 years ago by
researcher
• 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.0 years ago by
Guido Hooiveld
★ 3.9k • written 7.0 years ago by
Ellen O
• 0
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Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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