Biostar Idat

Showing : idat • reset

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4.9k

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microarray illumina idat

updated 5.5 years ago by Gordon Smyth 43k • written 5.5 years ago by kritikamish99 ▴ 10

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3.6k

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beadarray lumi illuminaio idat

updated 4 weeks ago by mad6kj • 0 • written 7.7 years ago by Sean Davis 21k

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2.5k

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minfi read.metharray.exp idat HM450k

3.8 years ago poojitha.stemcell ▴ 10

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1.4k

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lumidat idat microarray illumina

updated 5.9 years ago by Mark Cowley ▴ 400 • written 5.9 years ago by willj ▴ 30

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1.3k

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crlmm idat

updated 6.1 years ago by Matthew Ritchie ▴ 1000 • written 6.1 years ago by Shi, Tao ▴ 720

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1.2k

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limma illuminaio idat gzip

updated 4.2 years ago by Matthew Ritchie ▴ 1000 • written 4.2 years ago by Guido Hooiveld ★ 3.0k

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1.2k

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illuminaio idat

6.5 years ago • updated 6.4 years ago lacion • 0

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1.1k

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illuminaio idat beadarray

updated 5.9 years ago by Mike Smith ★ 5.0k • written 5.9 years ago by willj ▴ 30

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1.1k

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minfi idat annotation EPIC

updated 4.4 years ago by xue.zhang • 0 • written 4.4 years ago by Frocha ▴ 10

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1.0k

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gwastools idat gds format

updated 4.0 years ago by Stephanie M. Gogarten ▴ 800 • written 4.0 years ago by catbriggsm • 0

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957

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minfi methylation idat samplesheet

updated 3 months ago by sci_djw • 0 • written 2.2 years ago by researcher • 0

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926

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methylation illumina EPIC methylationepic idat

updated 4.2 years ago by Guido Hooiveld ★ 3.0k • written 4.2 years ago by Ellen O • 0

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301

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idat illumina limma read.idat

updated 7 months ago by Gordon Smyth 43k • written 7 months ago by bastien_chassagnol • 0

13 results • Page 1 of 1

Recent ...

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Answer: tximeta countsFromAbundance for downstream analysis by Michael Love 33k

The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…

Answer: DESeq2 - understanding intercept and contrasts by Michael Love 33k

For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…

Answer: Interaction terms and selection of coef in normal and shrunk results by Michael Love 33k

Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…

Answer: about baseMean in DEseq2 by Michael Love 33k

More information about the columns is here: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#access-…

Answer: DESeq2, what to do when controls are 7 times more abundant than treatments by Michael Love 33k

I generally recommend your option 2 here: filtering out genes unless they are minimally expressed in the lowly sequenced condition. This is…

Votes

A: plotPCA - how to add labels to a PCA plot

Answer: Can't produce a generegiontrack from my txdb anymore

Answer: how to get genomic coordinates from an MIndex object

Answer: How to sort out error in gdcCEAnalysis function of GDCRNATools R package?

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Scholar to Michael Lawrence 11k