Bioconductor Igraph

Showing : igraph • reset

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1.4k

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scater scran igraph scRNA-Seq rots

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by hamza_karakurt ▴ 50

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2.7k

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igraph

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Angel ▴ 40

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1.2k

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igraph software error adjacency matrix

updated 7.9 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by Angel ▴ 40

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1.5k

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QuACN igraph

6.7 years ago lljotall ▴ 10

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958

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ppi network analysis igraph

7.9 years ago Abhishek Pratap ▴ 190

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1.6k

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.3 years ago jan.soderman • 0

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3.3k

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igraph

6.5 years ago Andrew Box ▴ 10

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984

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graph pathways igraph

6.1 years ago genomic8328 ▴ 10

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900

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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1.2k

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STRINGdb igraph

5.1 years ago Samuel Lee • 0

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1.5k

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igraph network gene corexpression rna-seq

updated 2.7 years ago by Gordon Smyth 50k • written 5.1 years ago by aiswaryabioinfo • 0

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2.9k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by crgarcia • 0

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1.1k

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igraph networkanalysis Phylogenetics phyloseq

3.3 years ago Chantel • 0

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615

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GRanges igraph

updated 15 months ago by Lluís Revilla Sancho ▴ 730 • written 15 months ago by Bogdan ▴ 670

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2.0k

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software error geNet igraph genetclassifier

updated 8.7 years ago by saibar ▴ 20 • written 8.7 years ago by alakatos ▴ 130

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522

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WGCNA igraph

17 months ago María José • 0

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1.9k

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FEM igraph

updated 8.5 years ago by andrew • 0 • written 8.5 years ago by sirintra ▴ 10

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2.0k

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igraph spade

updated 6.9 years ago by johnheath346 • 0 • written 8.4 years ago by duncanjamesmurray01 • 0

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1.1k

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RamiGO R gene ontology igraph

8.2 years ago bkellman • 0

19 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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