Bioconductor Import

Showing : import • reset

votes

replies

2.6k

views

R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 23 months ago by jacorvar ▴ 40 • written 2.9 years ago by eraldagjika ▴ 20

votes

1.1k

views

.gpr raw Agilent MicroarrayData import

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by irina.st.louis4 • 0

votes

replies

1.9k

views

import

4.2 years ago Ofelia • 0

votes

replies

2.5k

views

software error BigWig import windows

5.5 years ago • updated 5.4 years ago lsilva.m • 0

vote

replies

1.1k

views

ddCt import analysis R qRTPCR

updated 6.1 years ago by Zhang, Jitao David ▴ 120 • written 6.1 years ago by mohammedtoufiq91 ▴ 10

votes

replies

1.8k

views

rtracklayer fasta import Biostrings

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by k.vitting.seerup ▴ 120

votes

replies

4.0k

views

bigwig rtracklayer import granges grangeslist

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

1.5k

views

rtracklayer gff gtf import import.gff3

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Marlin ▴ 20

votes

1.4k

views

rtracklayer bigwig import

updated 8.8 years ago by Michael Lawrence ★ 11k • written 8.8 years ago by zx8754 ▴ 10

votes

replies

3.0k

views

rtracklayer import bed files

9.4 years ago jmr • 0

vote

replies

3.4k

views

rtracklayer import bed

updated 9.5 years ago by Michael Lawrence ★ 11k • written 9.5 years ago by Peter Hickey ▴ 760

11 results • Page 1 of 1

Recent ...

Replies

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Awards • All

Popular Question to Assa Yeroslaviz ★ 1.5k