Bioconductor Import

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2.3k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 13 months ago by jacorvar ▴ 40 • written 2.1 years ago by eraldagjika ▴ 20

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873

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.gpr raw Agilent MicroarrayData import

updated 3.0 years ago by Gordon Smyth 51k • written 3.0 years ago by irina.st.louis4 • 0

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1.6k

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import

3.3 years ago Ofelia • 0

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2.0k

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software error BigWig import windows

4.6 years ago lsilva.m • 0

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965

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ddCt import analysis R qRTPCR

updated 5.2 years ago by Zhang, Jitao David ▴ 120 • written 5.2 years ago by mohammedtoufiq91 ▴ 10

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1.6k

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rtracklayer fasta import Biostrings

updated 5.8 years ago by Michael Lawrence ★ 11k • written 5.8 years ago by k.vitting.seerup ▴ 120

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3.4k

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bigwig rtracklayer import granges grangeslist

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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rtracklayer gff gtf import import.gff3

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by Marlin ▴ 20

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1.3k

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rtracklayer bigwig import

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by zx8754 ▴ 10

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2.6k

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rtracklayer import bed files

8.6 years ago jmr • 0

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2.9k

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rtracklayer import bed

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by Peter Hickey ▴ 740

11 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k