Bioconductor Import

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2.7k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 2.1 years ago by jacorvar ▴ 40 • written 3.0 years ago by eraldagjika ▴ 20

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1.1k

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.gpr raw Agilent MicroarrayData import

updated 4.0 years ago by Gordon Smyth 53k • written 4.0 years ago by irina.st.louis4 • 0

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1.9k

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import

4.3 years ago Ofelia • 0

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2.6k

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software error BigWig import windows

5.6 years ago lsilva.m • 0

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1.2k

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ddCt import analysis R qRTPCR

updated 6.2 years ago by Zhang, Jitao David ▴ 120 • written 6.2 years ago by mohammedtoufiq91 ▴ 10

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1.9k

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rtracklayer fasta import Biostrings

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by k.vitting.seerup ▴ 120

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4.1k

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bigwig rtracklayer import granges grangeslist

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.6k

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rtracklayer gff gtf import import.gff3

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Marlin ▴ 20

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1.5k

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rtracklayer bigwig import

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by zx8754 ▴ 10

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3.0k

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rtracklayer import bed files

9.6 years ago jmr • 0

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3.4k

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rtracklayer import bed

updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by Peter Hickey ▴ 760

11 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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