Bioconductor Import

Showing : import • reset

votes

replies

3.0k

views

bigwig rtracklayer import granges grangeslist

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

vote

replies

2.6k

views

rtracklayer import bed

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Peter Hickey ▴ 740

votes

replies

2.4k

views

rtracklayer import bed files

8.1 years ago jmr • 0

votes

replies

1.9k

views

R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 7 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

votes

replies

1.7k

views

software error BigWig import windows

4.1 years ago lsilva.m • 0

votes

replies

1.4k

views

import

2.8 years ago Ofelia • 0

votes

replies

1.4k

views

rtracklayer fasta import Biostrings

updated 5.3 years ago by Michael Lawrence ★ 11k • written 5.3 years ago by k.vitting.seerup ▴ 120

votes

1.2k

views

rtracklayer bigwig import

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by zx8754 ▴ 10

votes

replies

1.1k

views

rtracklayer gff gtf import import.gff3

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by Marlin ▴ 20

vote

replies

819

views

ddCt import analysis R qRTPCR

updated 4.7 years ago by Zhang, Jitao David ▴ 120 • written 4.7 years ago by mohammedtoufiq91 ▴ 10

votes

692

views

.gpr raw Agilent MicroarrayData import

updated 2.5 years ago by Gordon Smyth 50k • written 2.5 years ago by irina.st.louis4 • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Votes

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Awards • All