Bioconductor Indel

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1.6k

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PureCN indel somatic germline

updated 8.3 years ago by markus.riester ▴ 130 • written 8.3 years ago by pathkim • 0

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1.4k

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snv granges genomicranges variantannotation indel

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by addyS • 0

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1.2k

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pairwisealignment indel

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by oliwindram ▴ 10

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2.3k

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indel customprodb fasta variantannotation

updated 10.2 years ago by xiaojing.wang ▴ 50 • written 10.2 years ago by kristenbeck527 • 0

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1.6k

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indel sequencing alignment

10.4 years ago Merienne Nicolas ▴ 120

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1.5k

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rnaseq subjunc indel

updated 10.8 years ago by Wei Shi ★ 3.6k • written 10.8 years ago by daniel.silvestre ▴ 100

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4.2k

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bam indel genomicalignments biostrings

updated 10.8 years ago by Nathaniel Hayden ▴ 180 • written 10.8 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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