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indel
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reset
2
votes
3
replies
1.6k
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PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 8.3 years ago by
markus.riester
▴ 130 • written 8.3 years ago by
pathkim
• 0
1
vote
2
replies
1.4k
views
Locating enhancers that are mutated
snv
granges
genomicranges
variantannotation
indel
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.2 years ago by
addyS
• 0
0
votes
1
reply
1.2k
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
oliwindram
▴ 10
2
votes
4
replies
2.3k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 10.3 years ago by
xiaojing.wang
▴ 50 • written 10.3 years ago by
kristenbeck527
• 0
1
vote
0
replies
1.6k
views
Genome editing analysis with Illumina sequencing
indel
sequencing
alignment
10.5 years ago
Merienne Nicolas
▴ 120
2
votes
2
replies
1.5k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 10.9 years ago by
Wei Shi
★ 3.6k • written 10.9 years ago by
daniel.silvestre
▴ 100
6
votes
11
replies
4.3k
views
Comparing read sequence back to reference sequence
bam
indel
genomicalignments
biostrings
updated 10.9 years ago by
Nathaniel Hayden
▴ 180 • written 10.9 years ago by
Stefanie Tauber
▴ 40
7 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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