Bioconductor Indel

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1.6k

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PureCN indel somatic germline

updated 8.4 years ago by markus.riester ▴ 130 • written 8.4 years ago by pathkim • 0

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1.4k

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snv granges genomicranges variantannotation indel

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by addyS • 0

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1.2k

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pairwisealignment indel

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by oliwindram ▴ 10

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2.3k

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indel customprodb fasta variantannotation

updated 10.3 years ago by xiaojing.wang ▴ 50 • written 10.3 years ago by kristenbeck527 • 0

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1.6k

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indel sequencing alignment

10.5 years ago Merienne Nicolas ▴ 120

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1.6k

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rnaseq subjunc indel

updated 10.9 years ago by Wei Shi ★ 3.6k • written 10.9 years ago by daniel.silvestre ▴ 100

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4.3k

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bam indel genomicalignments biostrings

updated 10.9 years ago by Nathaniel Hayden ▴ 180 • written 10.9 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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