Showing : indel • reset
2
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3
replies
1.7k
views
PureCN can classify indel variants as germline vs. somatic ?
PureCN indel somatic germline
updated 8.6 years ago by ▴ 130 • written 8.6 years ago by • 0
1
vote
2
replies
1.5k
views
Locating enhancers that are mutated
snv granges genomicranges variantannotation indel
updated 9.4 years ago by ★ 11k • written 9.4 years ago by • 0
0
votes
1
reply
1.2k
views
Mapping sequence features to alignments
pairwisealignment indel
updated 9.5 years ago by 16k • written 9.5 years ago by ▴ 10
2
votes
4
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2.4k
views
customProDB: error aberrant fasta from indels
indel customprodb fasta variantannotation
updated 10.5 years ago by ▴ 50 • written 10.5 years ago by • 0
1
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0
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1.7k
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
10.7 years ago Merienne Nicolas ▴ 120
2
votes
2
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1.6k
views
Failed assertion in subjunc aligner for large indels
rnaseq subjunc indel
updated 11.2 years ago by ★ 3.6k • written 11.2 years ago by ▴ 100
6
votes
11
replies
4.5k
views
Comparing read sequence back to reference sequence
bam indel genomicalignments biostrings
updated 11.2 years ago by ▴ 180 • written 11.2 years ago by ▴ 40
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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