Bioconductor Indel

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1.4k

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PureCN indel somatic germline

updated 7.4 years ago by markus.riester ▴ 130 • written 7.4 years ago by pathkim • 0

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1.2k

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snv granges genomicranges variantannotation indel

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by addyS • 0

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1.0k

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pairwisealignment indel

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by oliwindram ▴ 10

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2.1k

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indel customprodb fasta variantannotation

updated 9.3 years ago by xiaojing.wang ▴ 50 • written 9.3 years ago by kristenbeck527 • 0

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1.4k

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indel sequencing alignment

9.5 years ago Merienne Nicolas ▴ 120

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1.3k

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rnaseq subjunc indel

updated 10.0 years ago by Wei Shi ★ 3.6k • written 10.0 years ago by daniel.silvestre ▴ 100

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3.4k

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bam indel genomicalignments biostrings

updated 10.0 years ago by Nathaniel Hayden ▴ 180 • written 10.0 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

Votes

Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

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Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k