Bioconductor Indel

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1.4k

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PureCN indel somatic germline

updated 7.5 years ago by markus.riester ▴ 130 • written 7.5 years ago by pathkim • 0

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1.2k

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snv granges genomicranges variantannotation indel

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by addyS • 0

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1.0k

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pairwisealignment indel

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by oliwindram ▴ 10

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2.1k

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indel customprodb fasta variantannotation

updated 9.4 years ago by xiaojing.wang ▴ 50 • written 9.4 years ago by kristenbeck527 • 0

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1.4k

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indel sequencing alignment

9.6 years ago Merienne Nicolas ▴ 120

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1.4k

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rnaseq subjunc indel

updated 10.0 years ago by Wei Shi ★ 3.6k • written 10.0 years ago by daniel.silvestre ▴ 100

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3.4k

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bam indel genomicalignments biostrings

updated 10.0 years ago by Nathaniel Hayden ▴ 180 • written 10.0 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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