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infrastructure
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4
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2.6k
views
News:
Bioconductor git transition BETA phase starts now.
git
svn
infrastructure
bioconductor
News
6.8 years ago
nitesh.turaga
▴ 140
3
votes
0
replies
1.7k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
8.9 years ago • updated 8.7 years ago
Matthew Ritchie
▴ 1000
1
vote
0
replies
1.5k
views
News:
BioCAsia, 4th November 2016, Brisbane, Australia
conference
transcription
epigenomics
visualization
infrastructure
News
7.8 years ago
Matthew Ritchie
▴ 1000
1
vote
4
replies
4.7k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure
cdf
probe
affy
Infrastructure
cdf
probe
affy
16.0 years ago
Hans-Ulrich Klein
▴ 330
1
vote
3
replies
2.6k
views
deseq2 DESeqDataSet size when saved
deseq2
infrastructure
deseqdataset
importing
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
eric.blanc
• 0
0
votes
0
replies
1.2k
views
S+ArrayAnalyzer and BioConductor Announcement
Microarray
SAGE
Annotation
Infrastructure
Microarray
SAGE
Annotation
Infrastructure
19.9 years ago
MOConnell@insightful.com
▴ 20
0
votes
0
replies
2.2k
views
Prestigious Research Fellowship in Biostatistics/Bioinformatics
Microarray
Survival
Infrastructure
Cancer
Breast
bridge
Microarray
Survival
Infrastructure
19.9 years ago
Wei, Wenbin
▴ 50
0
votes
0
replies
635
views
100K SNP chips for linkage
SNP
Microarray
Infrastructure
Cancer
affy
SNP
Microarray
Infrastructure
Cancer
affy
18.9 years ago
James W. MacDonald
65k
0
votes
0
replies
931
views
Job: Computational Biology Group at FHCRC is hiring
Infrastructure
Cancer
PROcess
Infrastructure
Cancer
PROcess
18.8 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
878
views
[OT] Biostatistician position available
Microarray
Infrastructure
Microarray
Infrastructure
18.6 years ago
Diego Diez
▴ 760
0
votes
0
replies
869
views
Cel -> MAGE-ML
Infrastructure
affy
RMAGEML
Infrastructure
affy
RMAGEML
18.4 years ago
Steffen Durinck
▴ 420
0
votes
5
replies
1.7k
views
extracting interactions between members of the KEGG pathways
Pathways
Infrastructure
Cancer
graph
Pathways
Infrastructure
Cancer
graph
updated 18.1 years ago by
rgentleman
★ 5.5k • written 18.1 years ago by
Jane Fridlyand
▴ 90
0
votes
1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival
Infrastructure
Cancer
hexbin
prada
rfcdmin
rflowcyt
Survival
Infrastructure
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Ulrik Stervbo
▴ 80
0
votes
0
replies
1.0k
views
2x2 factorial with dye effect, limma design
Microarray
Infrastructure
Microarray
Infrastructure
17.3 years ago
Gordon Smyth
50k
0
votes
0
replies
621
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation
Infrastructure
Cancer
Annotation
Infrastructure
Cancer
16.7 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.2k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
16.5 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
0
replies
829
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure
biomaRt
Infrastructure
biomaRt
16.2 years ago
Steffen
▴ 500
0
votes
1
reply
1.3k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 16.0 years ago by
Patrick Aboyoun
★ 1.6k • written 16.0 years ago by
Martin Morgan
25k
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO
Infrastructure
hgu95av2
Biobase
Ruuid
AnnotationDbi
GO
Infrastructure
hgu95av2
Biobase
updated 16.0 years ago by
Martin Morgan
25k • written 16.0 years ago by
Vladimir Morozov
▴ 130
0
votes
1
reply
854
views
Project Enquiry!
Infrastructure
Infrastructure
15.7 years ago
Kat
▴ 20
0
votes
0
replies
911
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure
Infrastructure
15.7 years ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.3k
views
A code kata: evening-out *Ranges ends.
Infrastructure
Cancer
IRanges
Infrastructure
Cancer
IRanges
13.7 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
1.3k
views
GSEA to discover co-regulated genes
Transcription
Annotation
Pathways
Infrastructure
probe
convert
GSEABase
Transcription
15.3 years ago
Paul Geeleher
★ 1.3k
0
votes
0
replies
975
views
Research positions available in neuroproteomics
Proteomics
Infrastructure
Proteomics
Infrastructure
15.2 years ago
Abhilash Venu
▴ 340
0
votes
0
replies
813
views
NOTE: bioconductor.org system maintenance; planned downtime 12pm-1pm PDT Friday 9/18
Infrastructure
Infrastructure
14.6 years ago
Patrick Aboyoun
★ 1.6k
0
votes
7
replies
2.2k
views
Bioconductor 2.6 is released
Sequencing
Microarray
Visualization
Infrastructure
PROcess
beadarray
keggorthology
eisa
updated 7.7 years ago by
wangyizhusss
• 0 • written 14.0 years ago by
Patrick Aboyoun
★ 1.6k
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Neel Aluru
▴ 460
0
votes
0
replies
1.4k
views
illuminaHumanv4 mappings
Infrastructure
Cancer
Homo sapiens
probe
AnnotationDbi
ASSIGN
Infrastructure
Cancer
probe
12.6 years ago
Mark Cowley
▴ 910
0
votes
2
replies
974
views
"internal equal" overlap mode for GRangesList
Infrastructure
Infrastructure
updated 12.5 years ago by
Malcolm Cook
★ 1.6k • written 12.5 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
1.3k
views
[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing
Infrastructure
Sequencing
Infrastructure
12.4 years ago
Ido M. Tamir
▴ 150
0
votes
0
replies
1.2k
views
Open Position - Academic Coordinator for Bioinformatics
Proteomics
Infrastructure
Proteomics
Infrastructure
12.1 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.2k
views
2 more Job Announcements
Genetics
Infrastructure
Genetics
Infrastructure
12.1 years ago
Jenny Drnevich
★ 2.0k
0
votes
0
replies
941
views
2012 Bioconductor European Developers' Workshop - annoucement
Proteomics
Infrastructure
Proteomics
Infrastructure
11.9 years ago
Mark Robinson
▴ 880
0
votes
8
replies
2.0k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 11.7 years ago by
Steve Lianoglou
★ 13k • written 11.7 years ago by
Hervé Pagès
16k
0
votes
2
replies
2.5k
views
counting RNA-seq reads in R/BioC
GO
Infrastructure
Rsubread
easyRNASeq
GO
Infrastructure
Rsubread
easyRNASeq
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.6 years ago by
Mark Robinson
▴ 880
0
votes
5
replies
1.1k
views
pooling for parallel hierarchical operations
Infrastructure
Infrastructure
updated 11.5 years ago by
Martin Morgan
25k • written 11.5 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Bioinformatics Position Opening
Proteomics
Infrastructure
Proteomics
Infrastructure
11.3 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.3k
views
Open computational biologist position at Genentech
Infrastructure
Infrastructure
11.3 years ago
Michael Lawrence
★ 11k
0
votes
2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 11.3 years ago by
Martin Morgan
25k • written 11.3 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.1 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.3k
views
Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure
Infrastructure
11.1 years ago
Jan T Kim
▴ 50
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
0
replies
1.6k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA
Annotation
Normalization
Visualization
Clustering
Infrastructure
Cancer
BSgenome
vsn
11.1 years ago
Matthew Thornton
▴ 350
0
votes
5
replies
4.6k
views
Finding mismatches between reads and reference sequence
Infrastructure
Cancer
BSgenome
BSgenome
Infrastructure
Cancer
BSgenome
BSgenome
updated 11.1 years ago by
David Greber
▴ 30 • written 11.1 years ago by
Hervé Pagès
16k
0
votes
1
reply
970
views
convert IDs in a data frame?
GO
Infrastructure
Cancer
GO
Infrastructure
Cancer
updated 10.8 years ago by
Marc Carlson
★ 7.2k • written 10.8 years ago by
Hervé Pagès
16k
0
votes
4
replies
1.8k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 10.8 years ago by
Alejandro Reyes
★ 1.9k • written 10.8 years ago by
Ioannis Vlachos
▴ 40
0
votes
2
replies
1.0k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 10.7 years ago by
Tim Triche
★ 4.2k • written 10.7 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Reopening of Computational Biologist position at Genentech
Infrastructure
PROcess
Infrastructure
PROcess
10.7 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.4k
views
Bioinformatics Facility Director Position at UC Riverside
Proteomics
Infrastructure
Proteomics
Infrastructure
10.6 years ago
Thomas Girke
★ 1.7k
0
votes
5
replies
3.4k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.1 years ago by
Julian Gehring
★ 1.3k • written 10.1 years ago by
enricoferrero
▴ 660
50 results • Page
1 of 1
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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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