Bioconductor Interaction

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2.1k

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DESeq2 multifactorialdesign interaction InteractionSet

updated 3 months ago by Michael Love 43k • written 3 months ago by Integrative • 0

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1.1k

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DESeq2 interaction coefficient LinearModel RNASeq

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by Pedro Milanez-Almeida ▴ 10

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947

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interaction DESeq2

updated 3.2 years ago by swbarnes2 ★ 1.4k • written 3.2 years ago by Tait • 0

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5.2k

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DifferentialExpression contrasts interaction DESeq2

written 3.4 years ago by Nicole ▴ 10

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1.1k

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DESeq2 interaction pairwise

4.1 years ago Lucas • 0

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9.0k

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LRT DESeq2 interaction

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by annamariabugaj ▴ 10

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1.6k

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limma interaction

5.1 years ago Sindre ▴ 110

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1.6k

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DESeq2 interaction differential expression

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by charles.foster ▴ 180

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1.2k

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mircomb mrna mirna degs interaction

5.3 years ago andreia ▴ 10

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1.5k

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deseq2 interaction model

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by aec ▴ 90

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1.2k

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graphite interaction

updated 5.5 years ago by gabriele.sales ▴ 100 • written 5.5 years ago by emisecherre • 0

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2.2k

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deseq2 interaction

updated 5.7 years ago by sebastian.lobentanzer ▴ 60 • written 5.7 years ago by ktrns • 0

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1.6k

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random effects interaction limma rna-seq

6.4 years ago flippy23 • 0

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1.1k

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edger deseq2 interaction design matrix

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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DEXSeq interaction

6.7 years ago zhenzuo2 • 0

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1.1k

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edge differential gene expression timecourse interaction

7.2 years ago rubi ▴ 110

16 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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