Bioconductor Interaction

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935

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DESeq2 interaction coefficient LinearModel RNASeq

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by Pedro Milanez-Almeida ▴ 10

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833

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interaction DESeq2

updated 2.5 years ago by swbarnes2 ★ 1.4k • written 2.5 years ago by Tait • 0

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4.5k

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DifferentialExpression contrasts interaction DESeq2

written 2.7 years ago by Nicole ▴ 10

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940

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DESeq2 interaction pairwise

3.5 years ago Lucas • 0

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7.8k

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LRT DESeq2 interaction

updated 3.8 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by annamariabugaj ▴ 10

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1.4k

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limma interaction

4.4 years ago Sindre ▴ 110

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1.3k

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DESeq2 interaction differential expression

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by charles.foster ▴ 160

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1.0k

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mircomb mrna mirna degs interaction

4.6 years ago andreia ▴ 10

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1.3k

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deseq2 interaction model

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by aec ▴ 90

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1.1k

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graphite interaction

updated 4.8 years ago by gabriele.sales ▴ 100 • written 4.8 years ago by emisecherre • 0

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1.9k

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deseq2 interaction

updated 5.0 years ago by sebastian.lobentanzer ▴ 50 • written 5.0 years ago by ktrns • 0

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1.5k

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random effects interaction limma rna-seq

5.7 years ago flippy23 • 0

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883

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edger deseq2 interaction design matrix

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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DEXSeq interaction

6.0 years ago zhenzuo2 • 0

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1.0k

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edge differential gene expression timecourse interaction

6.5 years ago rubi ▴ 110

15 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

Votes

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

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