Showing : isoform • reset
6
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10
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2.5k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 29 days ago by ★ 4.6k • written 5 weeks ago by ▴ 10
0
votes
0
replies
514
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
20 months ago Craig • 0
0
votes
2
replies
812
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 2.1 years ago by • 0
0
votes
5
replies
2.8k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
2.7 years ago • updated 2.6 years ago priyanka.m • 0
0
votes
0
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1.6k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
4.3 years ago ra711 • 0
0
votes
5
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1.6k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 620
0
votes
4
replies
1.3k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 620
1
vote
4
replies
1.5k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.3 years ago by ▴ 120 • written 5.3 years ago by • 0
1
vote
4
replies
1.3k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 5.4 years ago by ★ 1.4k • written 5.4 years ago by • 0
1
vote
5
replies
1.5k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 6.1 years ago by ▴ 40
0
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0
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1.1k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
7.2 years ago ilyco • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: Newbie Question - adding metadata to an analysis by Bryan H • 0
Makes sense now, thanks for the help!
Comment: Deseq2, enrichGO and ensembl ID by Quang • 0
Hi James -- I hope to piggy back on this question of how to deal with the ensemble ID with version ID suffix. In contrast to https://suppor…
Comment: Newbie Question - adding metadata to an analysis by James W. MacDonald 67k
You don't need to generate an `ExpressionSet`, as you already have a `GeneFeatureSet`, which extends `eSet` and is a better fit for what yo…
Comment: Newbie Question - adding metadata to an analysis by Bryan H • 0
Thanks for the documentation. I have most of it working, except for the most critical step - incorporating the new metadata with the datase…
Comment: Diffbind interpretation of data - fold change by Vera • 0
Thank you for confirming that the foldchange is log2
Votes
A: Trajectory analysis for single cell sequencing
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
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