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isoform
•
reset
6
votes
10
replies
3.5k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma
isoform
edgeR
salmon
R
updated 12 months ago by
ATpoint
★ 5.0k • written 13 months ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
758
views
IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
2.6 years ago
Craig
• 0
0
votes
2
replies
1.1k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 3.1 years ago by
lhaiyan3
• 0
0
votes
5
replies
3.4k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
3.7 years ago • updated 3.6 years ago
priyanka.m
• 0
0
votes
0
replies
2.0k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
5.2 years ago
ra711
• 0
0
votes
5
replies
2.1k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 5.4 years ago by
Gordon Smyth
53k • written 5.4 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.8k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 5.4 years ago by
Gordon Smyth
53k • written 5.4 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
2.0k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 6.2 years ago by
k.vitting.seerup
▴ 120 • written 6.2 years ago by
asmita
• 0
1
vote
4
replies
1.7k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 6.3 years ago by
swbarnes2
★ 1.4k • written 6.3 years ago by
angel.campos
• 0
1
vote
5
replies
1.9k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 7.1 years ago by
A
▴ 60
0
votes
0
replies
1.3k
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
8.2 years ago
ilyco
• 0
11 results • Page
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Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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★ 1.6k
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Nikos Ignatiadis
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