Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
isoform
•
reset
6
votes
10
replies
3.4k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma
isoform
edgeR
salmon
R
updated 11 months ago by
ATpoint
★ 5.0k • written 11 months ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
734
views
IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
2.5 years ago
Craig
• 0
0
votes
2
replies
1.1k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 3.0 years ago by
lhaiyan3
• 0
0
votes
5
replies
3.3k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
3.6 years ago • updated 3.5 years ago
priyanka.m
• 0
0
votes
0
replies
2.0k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
5.1 years ago
ra711
• 0
0
votes
5
replies
2.0k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 5.3 years ago by
Gordon Smyth
53k • written 5.3 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.7k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 5.3 years ago by
Gordon Smyth
53k • written 5.3 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
1.9k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 6.1 years ago by
k.vitting.seerup
▴ 120 • written 6.1 years ago by
asmita
• 0
1
vote
4
replies
1.6k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 6.2 years ago by
swbarnes2
★ 1.4k • written 6.2 years ago by
angel.campos
• 0
1
vote
5
replies
1.9k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 6.9 years ago by
A
▴ 60
0
votes
0
replies
1.3k
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
8.0 years ago
ilyco
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
tomaamylikefood
• 0
Using biomaRt to extract SNP information from genomic regions is as simple as setting the correct dataset in this case, and defining your …
Comment: Save the Date for EuroBioC2026 in Turku!
by
tomaamylikefood
• 0
If you re interested in staying productive and entertained while following updates from events like EuroBioC2026, you can Download free And…
Answer: Error installing Seqinfo
by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Comment: Getting a large intercept with DESeq2
by
Michael Love
43k
Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…
Comment: Getting a large intercept with DESeq2
by
James W. MacDonald
68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Votes
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Issues with downloading biomaRt - SeqInfo and S4 Vectors
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Stephen Piccolo
▴ 600
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Hervé Pagès
16k
Popular Question
to
shepherl
4.2k
Locations
• All
Singapore,
just now
United States,
30 minutes ago
United States,
34 minutes ago
United States,
1 hour ago
United States,
2 hours ago
Traffic: 863 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6