Showing : isoform • reset
6
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10
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3.8k
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What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 14 months ago by ★ 5.0k • written 14 months ago by ▴ 10
0
votes
0
replies
812
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.7 years ago Craig • 0
0
votes
2
replies
1.2k
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 3.2 years ago by • 0
0
votes
5
replies
3.5k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.8 years ago • updated 3.7 years ago priyanka.m • 0
0
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0
replies
2.1k
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HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
5.3 years ago ra711 • 0
0
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5
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2.1k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 5.5 years ago by 53k • written 5.5 years ago by ▴ 620
0
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4
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1.9k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 620
1
vote
4
replies
2.1k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 6.3 years ago by ▴ 120 • written 6.3 years ago by • 0
1
vote
4
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1.7k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 6.4 years ago by ★ 1.4k • written 6.4 years ago by • 0
1
vote
5
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2.0k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 7.2 years ago by ▴ 60
0
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0
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1.3k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
8.3 years ago ilyco • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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