Showing : limmaGUI • reset
0
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9
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1.9k
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Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.9 years ago • updated 18.8 years ago chris umbricht ▴ 110
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma limmaGUI beta
22 months ago fluentin44 • 0
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 160
3
votes
6
replies
6.8k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago jaydengitt • 0
0
votes
6
replies
2.3k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.8 years ago by ▴ 10 • written 15.8 years ago by ▴ 50
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui proteomics
8.5 years ago vedran.franke • 0
1
vote
5
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2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.9 years ago by • 0 • written 14.6 years ago by ▴ 60
1
vote
5
replies
1.1k
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI normalization limma voom Normalization
updated 10 months ago by 50k • written 10 months ago by • 0
0
votes
4
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1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.1 years ago Gordon Smyth 50k
1
vote
4
replies
444
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 3 months ago by 50k • written 3 months ago by ▴ 10
0
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4
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1.4k
views
getting normexp (and log2 transformed) values - not further-processed M values
Microarray limma limmaGUI Microarray limma limmaGUI
14.6 years ago adoty@umd.edu ▴ 30
0
votes
4
replies
1.1k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 18.8 years ago by ▴ 170 • written 18.8 years ago by 50k
6
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4
replies
1.0k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.3 years ago Giovanni • 0
0
votes
3
replies
1.4k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
15.6 years ago Gordon Smyth 50k
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.8 years ago by ★ 3.4k • written 18.8 years ago by ▴ 170
0
votes
3
replies
1.3k
views
limma: print-tip loess and empty spots
Normalization GO GUI limma limmaGUI Normalization GO GUI limma limmaGUI
17.0 years ago Gordon Smyth 50k
0
votes
3
replies
1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
3
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2.0k
views
Limma: correct calculation of B statistics (log odds)
limma limmaGUI limma limmaGUI
updated 18.1 years ago by ▴ 290 • written 18.1 years ago by ★ 1.9k
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
1
vote
3
replies
369
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 4 weeks ago by 50k • written 5 weeks ago by • 0
0
votes
2
replies
2.2k
views
problem with tkrplot installation
limmaGUI limmaGUI
updated 15.8 years ago by 65k • written 15.8 years ago by ▴ 20
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 50
0
votes
2
replies
884
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.8 years ago by ▴ 90 • written 15.8 years ago by ▴ 140
0
votes
2
replies
1.2k
views
limmaGUI: target file and spot file
limmaGUI limmaGUI
updated 15.8 years ago by ▴ 910 • written 15.8 years ago by ▴ 10
0
votes
2
replies
862
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.9 years ago by ▴ 40 • written 18.9 years ago by ▴ 110
0
votes
2
replies
322
views
limma model matrix questions
limmaGUI limma pairedsamples
12 weeks ago whyw6948 • 0
0
votes
2
replies
895
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 40
1
vote
2
replies
988
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
19 months ago walkerrh95 • 0
0
votes
2
replies
999
views
Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 18.1 years ago by 65k • written 18.1 years ago by ★ 1.9k
0
votes
2
replies
964
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.5 years ago by 50k • written 19.5 years ago by ▴ 50
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 18.5 years ago by ▴ 150 • written 18.5 years ago by ▴ 110
0
votes
2
replies
800
views
gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 20.0 years ago by ▴ 1000 • written 20.0 years ago by ▴ 90
0
votes
2
replies
1.2k
views
limmaGUI: Warning: ActiveTcl could not be found....
limmaGUI limmaGUI
updated 20.6 years ago by ▴ 810 • written 20.6 years ago by ▴ 770
0
votes
2
replies
1.1k
views
limmaGUI: Warning: ActiveTcl could not be found...
limmaGUI limmaGUI
updated 20.6 years ago by ▴ 770 • written 20.6 years ago by ▴ 1000
0
votes
2
replies
906
views
LimmaGUI Background corrections
limmaGUI limmaGUI
updated 19.7 years ago by 50k • written 19.7 years ago by ▴ 160
0
votes
2
replies
1.1k
views
help for limmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 17.0 years ago by ★ 1.9k • written 17.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
18.5 years ago Gordon Smyth 50k
0
votes
2
replies
1.2k
views
problem detected during utilization of LimmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 10
0
votes
1
reply
852
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.7 years ago by ▴ 1000 • written 19.7 years ago by ▴ 100
0
votes
1
reply
912
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 30
0
votes
1
reply
797
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 80
0
votes
1
reply
967
views
LimmaGUI
limmaGUI limmaGUI
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.7 years ago by ▴ 160 • written 20.7 years ago by ▴ 1000
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 16.0 years ago by ▴ 130 • written 16.0 years ago by ▴ 450
0
votes
1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.3k
views
One-Color Agilent Data into Limma GUI
GO limma limmaGUI GO limma limmaGUI
updated 16.6 years ago by ★ 1.9k • written 16.6 years ago by ▴ 230
0
votes
1
reply
1.1k
views
asMatrixWeights: weights of unexpected shape
GUI limma limmaGUI GUI limma limmaGUI
updated 15.6 years ago by ▴ 90 • written 15.6 years ago by 50k
0
votes
1
reply
1.6k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.6 years ago by ▴ 320 • written 15.6 years ago by ▴ 90
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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