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R quantile list

2.9 years ago sat • 0

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3.2k

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list save dataframe

updated 3.6 years ago by shepherl 4.3k • written 3.6 years ago by orticello.1160797 ▴ 10

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2.2k

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TCGA tcgabiolinks list reformat

8.1 years ago Guido Hooiveld ★ 4.1k

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4.6k

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dnastringset list stringset

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by vinod.acear ▴ 50

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r iranges findoverlaps IntegerList List

9.5 years ago • updated 9.2 years ago jian_liangli • 0

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2.4k

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coercion data manipulation s4vectors List

9.6 years ago Jurat Shahidin ▴ 80

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deseq2 heatmap clustering file list

updated 10.4 years ago by Michael Love 43k • written 10.4 years ago by chariko • 0

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org.mm.eg.db select list

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by Assa Yeroslaviz ★ 1.5k

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mirror preferred list

updated 10.7 years ago by Dan Tenenbaum ★ 8.2k • written 10.7 years ago by lejeczek ▴ 10

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Piano List

updated 10.8 years ago by Leif Väremo ▴ 70 • written 10.8 years ago by nonCodingGene ▴ 10

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rle list irange grangeslist

updated 10.9 years ago by Chris Seidel ▴ 80 • written 10.9 years ago by gen ▴ 30

11 results • Page 1 of 1

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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