Showing : methyanalysis • reset
1
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13
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2.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
4
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10
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4.4k
views
Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
1
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9
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3.6k
views
strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 23 months ago by 21k • written 7.1 years ago by • 0
0
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8
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2.2k
views
methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
0
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6
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3.0k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
1
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5
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1.3k
views
Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.1 years ago by ▴ 80 • written 9.1 years ago by ▴ 370
2
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4
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2.6k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
0
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2
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1.3k
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.2 years ago by ▴ 440 • written 11.2 years ago by ▴ 20
0
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2
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1.7k
views
Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.3 years ago by ▴ 440 • written 11.3 years ago by ★ 13k
1
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2
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1.4k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
0
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1
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4.1k
views
methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.1 years ago by ▴ 80 • written 9.1 years ago by ▴ 370
0
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1
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1.1k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.3 years ago by 21k • written 11.3 years ago by ▴ 10
0
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1
reply
917
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problem with identifySigDMR command
methyAnalysis
7.8 years ago • updated 7.7 years ago yuping.zhang • 0
0
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0
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613
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
3.4 years ago coobzie • 0
0
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0
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991
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.5 years ago Shicheng Guo • 0
0
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0
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1.7k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.2 years ago Ed Schwalbe ▴ 20
0
votes
0
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809
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.4 years ago charleneee95 • 0
0
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0
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1.2k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
0
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0
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721
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.2 years ago mcahn • 0
0
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0
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1.7k
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methyAnalysis error with example data
methyanalysis
7.9 years ago Tom ▴ 10
0
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0
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1.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
21 results • Page 1 of 1
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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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