Bioconductor MethylKit

Showing : methylKit • reset

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640

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methylKit

updated 10 months ago by James W. MacDonald 68k • written 10 months ago by Satyanarayan • 0

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619

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methylKit

updated 13 months ago by alex.gos90 ▴ 10 • written 13 months ago by Krisztina • 0

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1.4k

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methylKit

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by CHEN • 0

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544

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methylKit

17 months ago Modoc Kesner ▴ 10

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974

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methylKit

2.1 years ago Andrés • 0

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959

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methRead methylkit

2.7 years ago liulip • 0

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1.0k

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methyl methylKit

3.4 years ago hasche • 0

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2.3k

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GenomicRanges methylKit S4Vectors

updated 3.5 years ago by James W. MacDonald 68k • written 3.5 years ago by hasche • 0

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1.7k

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methylkit

updated 3.9 years ago by alex.gos90 ▴ 10 • written 4.2 years ago by hasche • 0

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2.3k

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methylation methylKit bsseq

updated 3.9 years ago by alex.gos90 ▴ 10 • written 4.1 years ago by Arindam ▴ 80

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1.9k

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annotateWithGeneParts methylKit

3.9 years ago tanmayroy1979 ▴ 20

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1.7k

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methylkit normalizecoverage NA

updated 6.9 years ago by altuna akalin ▴ 20 • written 6.9 years ago by GFM ▴ 20

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1.6k

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R bioconductor methylation methylkit

updated 7.1 years ago by altuna akalin ▴ 20 • written 7.1 years ago by nilaycan • 0

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2.4k

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methylkit Tutorial

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by s1432985 • 0

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2.2k

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methylKit

updated 8.2 years ago by altuna akalin ▴ 20 • written 8.2 years ago by ch8316f5eyu • 0

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2.2k

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methylKit

8.2 years ago kamal.fartiyal84 ▴ 10

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2.0k

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methylKit bioconductor

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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