Bioconductor MethylKit

Showing : methylKit • reset

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methylKit

updated 11 months ago by James W. MacDonald 68k • written 11 months ago by Satyanarayan • 0

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642

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methylKit

updated 14 months ago by alex.gos90 ▴ 10 • written 14 months ago by Krisztina • 0

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1.5k

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methylKit

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by CHEN • 0

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565

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methylKit

18 months ago Modoc Kesner ▴ 10

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991

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methylKit

2.2 years ago Andrés • 0

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985

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methRead methylkit

2.8 years ago liulip • 0

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1.1k

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methyl methylKit

3.5 years ago hasche • 0

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2.4k

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GenomicRanges methylKit S4Vectors

updated 3.5 years ago by James W. MacDonald 68k • written 3.5 years ago by hasche • 0

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1.7k

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methylkit

updated 4.0 years ago by alex.gos90 ▴ 10 • written 4.3 years ago by hasche • 0

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2.4k

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methylation methylKit bsseq

updated 4.0 years ago by alex.gos90 ▴ 10 • written 4.2 years ago by Arindam ▴ 80

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2.0k

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annotateWithGeneParts methylKit

4.0 years ago tanmayroy1979 ▴ 20

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1.7k

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methylkit normalizecoverage NA

updated 7.0 years ago by altuna akalin ▴ 20 • written 7.0 years ago by GFM ▴ 20

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1.7k

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R bioconductor methylation methylkit

updated 7.2 years ago by altuna akalin ▴ 20 • written 7.2 years ago by nilaycan • 0

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2.4k

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methylkit Tutorial

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by s1432985 • 0

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2.3k

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methylKit

updated 8.3 years ago by altuna akalin ▴ 20 • written 8.3 years ago by ch8316f5eyu • 0

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2.2k

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methylKit

8.3 years ago kamal.fartiyal84 ▴ 10

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2.0k

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methylKit bioconductor

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

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Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0

The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Comment: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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