Bioconductor MethylKit

Showing : methylKit • reset

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258

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methylKit

updated 3 months ago by James W. MacDonald 67k • written 3 months ago by Satyanarayan • 0

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378

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methylKit

updated 6 months ago by alex.gos90 ▴ 10 • written 6 months ago by Krisztina • 0

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958

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methylKit

updated 9 months ago by James W. MacDonald 67k • written 10 months ago by CHEN • 0

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371

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methylKit

9 months ago Modoc Kesner ▴ 10

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764

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methylKit

18 months ago Andrés • 0

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790

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methRead methylkit

2.1 years ago liulip • 0

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891

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methyl methylKit

2.8 years ago hasche • 0

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1.9k

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GenomicRanges methylKit S4Vectors

updated 2.9 years ago by James W. MacDonald 67k • written 2.9 years ago by hasche • 0

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1.5k

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methylkit

updated 3.3 years ago by alex.gos90 ▴ 10 • written 3.6 years ago by hasche • 0

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1.7k

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methylation methylKit bsseq

updated 3.3 years ago by alex.gos90 ▴ 10 • written 3.5 years ago by Arindam ▴ 80

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1.7k

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annotateWithGeneParts methylKit

3.4 years ago tanmayroy1979 ▴ 20

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1.5k

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methylkit normalizecoverage NA

updated 6.3 years ago by altuna akalin ▴ 20 • written 6.3 years ago by GFM ▴ 20

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1.4k

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R bioconductor methylation methylkit

updated 6.5 years ago by altuna akalin ▴ 20 • written 6.5 years ago by nilaycan • 0

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1.9k

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methylkit Tutorial

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by s1432985 • 0

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2.0k

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methylKit

updated 7.6 years ago by altuna akalin ▴ 20 • written 7.6 years ago by ch8316f5eyu • 0

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2.0k

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methylKit

7.6 years ago kamal.fartiyal84 ▴ 10

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1.8k

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methylKit bioconductor

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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