Bioconductor Methylationepic

Showing : methylationepic • reset

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methylationEPIC minfi microarray epigenetics EPIC

6.7 years ago firestar ▴ 20

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microarray methylationEPIC epigenetics minfi EPIC

6.7 years ago firestar ▴ 20

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ChAMP champ 2.9.10 methylationepic

7.7 years ago david.ch • 0

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rnbeads methylation methylationepic dna methylation

7.8 years ago gabrielrfries • 0

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champ methylationepic

updated 7.8 years ago by Yuan Tian ▴ 290 • written 7.8 years ago by csappleby-mallinder1 • 0

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ChAMP methylationepic epicarray epigenomics

updated 8.2 years ago by rcavalca ▴ 140 • written 8.2 years ago by karthikrpad ▴ 10

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minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP

8.4 years ago Ellen O • 0

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methylation illumina EPIC methylationepic idat

updated 8.6 years ago by Guido Hooiveld ★ 4.1k • written 8.6 years ago by Ellen O • 0

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methylation epic microarray minfi methylationepic

8.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.8 years ago chelsey.ju • 0

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minfi illumina methylationEPIC densityplot

8.9 years ago annabelle.congras ▴ 10

11 results • Page 1 of 1

Recent ...

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Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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