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methylationepic
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0
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1.6k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
6.8 years ago
firestar
▴ 20
0
votes
0
replies
1.2k
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
6.8 years ago
firestar
▴ 20
3
votes
6
replies
2.8k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
7.8 years ago • updated 7.7 years ago
david.ch
• 0
0
votes
0
replies
1.4k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
7.8 years ago
gabrielrfries
• 0
0
votes
1
reply
2.5k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 7.9 years ago by
Yuan Tian
▴ 290 • written 7.9 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
4.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 8.2 years ago by
rcavalca
▴ 140 • written 8.2 years ago by
karthikrpad
▴ 10
0
votes
0
replies
1.2k
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
8.5 years ago
Ellen O
• 0
0
votes
2
replies
2.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 8.6 years ago by
Guido Hooiveld
★ 4.1k • written 8.6 years ago by
Ellen O
• 0
0
votes
4
replies
2.2k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
8.8 years ago
nhejazi
• 0
0
votes
0
replies
1.4k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
8.9 years ago
chelsey.ju
• 0
0
votes
3
replies
2.2k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
9.0 years ago
annabelle.congras
▴ 10
11 results • Page
1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
victor04052024
• 0
The information is interesting, and your writing is excellent. I will provide you a link to my website [Baseball bros](https://baseball-gam…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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Gordon Smyth
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Vincent J. Carey, Jr.
6.7k
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Istvan Albert
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Dario Strbenac
★ 1.6k
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Nikos Ignatiadis
▴ 180
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