Showing : methylationepic • reset
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Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 6.7 years ago by ▴ 140 • written 6.7 years ago by ▴ 10
3
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could not find function "champ.load"
ChAMP champ 2.9.10 methylationepic
6.2 years ago david.ch • 0
0
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4
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minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
7.2 years ago nhejazi • 0
0
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2
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1.9k
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Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 7.0 years ago by ★ 4.0k • written 7.0 years ago by • 0
0
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908
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Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
6.9 years ago Ellen O • 0
0
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1.9k
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ChAMP Methylation analysis error code "could not find function champ.load"
champ methylationepic
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by • 0
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1.1k
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differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
6.3 years ago gabrielrfries • 0
0
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1.1k
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.2 years ago rmf ▴ 20
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3
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MINFI missing samples in qcreports and densityplots
minfi illumina methylationEPIC densityplot
7.4 years ago annabelle.congras ▴ 10
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839
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.2 years ago rmf ▴ 20
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Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
7.3 years ago chelsey.ju • 0
11 results • Page 1 of 1
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Answer: Get gene symbols for a set of hg19 coordinates by ATpoint ★ 4.1k
Simply download a GTF file (for example from GENCODE) matching the current genome and/or annotation version you are using in your project a…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by ATpoint ★ 4.1k
Try the mirror suggestion for now: https://support.bioconductor.org/p/9153734/#9153755
Comment: unable to access bioconductor packages - qvalue installation failed... by ATpoint ★ 4.1k
Seems to be a general problem at the moment, can reproduce. The the mirror suggestion here: https://support.bioconductor.org/p/9153734/#915…
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by Karosham.Reddy • 0
Thank you for the suggestion the ENmix version is using is ENmix_1.38.01. I tried your suggested code, R identified the idat files but sti…
Comment: pathview error by Guido Hooiveld ★ 4.0k
> Will removing the NA values help solve the problem? Did you try? And, FWIW, in the cases I had ensembl-based RNA-seq datasets I removed…
Votes
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
unable to access bioconductor packages - qvalue installation failed...
Not able to install any Bioconductor 3.18 package [unable to access index]
can't open mghp.osn.xsede.org
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